Variant report

Variant	rs11204760
Chromosome Location	chr1:150995961-150995962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150995604..150998641-chr1:151041475..151044833,5	MCF-7	breast:
2	chr1:150995254..150996854-chr1:151029340..151030988,2	MCF-7	breast:
3	chr1:150994233..150997009-chr1:151128495..151131109,2	MCF-7	breast:
4	chr1:150995720..151000061-chr1:151021068..151023867,4	K562	blood:
5	chr1:150980802..150982666-chr1:150995777..150997822,2	MCF-7	breast:
6	chr1:150995615..151002939-chr1:151018225..151024612,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197622	Chromatin interaction
ENSG00000143443	Chromatin interaction
ENSG00000143363	Chromatin interaction
ENSG00000213190	Chromatin interaction
ENSG00000143458	Chromatin interaction
ENSG00000163154	Chromatin interaction
ENSG00000143409	Chromatin interaction
ENSG00000163156	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12141871	0.82[AMR][1000 genomes]
rs12145224	0.82[AMR][1000 genomes]
rs3738478	0.82[ASN][1000 genomes]
rs6664622	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150981800-150997000	Weak transcription	Aorta	Aorta
2	chr1:150981800-151006400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:150982000-150996800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr1:150982000-150997000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:150982000-150997000	Weak transcription	Esophagus	oesophagus
6	chr1:150982000-150997000	Weak transcription	Psoas Muscle	Psoas
7	chr1:150982000-150998000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:150982000-150999600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:150982000-151009000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:150982200-150997200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:150982200-150997200	Weak transcription	HUVEC	blood vessel
12	chr1:150982200-150999400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:150982200-150999800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:150982200-151002800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:150983200-150997200	Weak transcription	Thymus	Thymus
16	chr1:150984000-150997000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:150984000-150999800	Weak transcription	Hela-S3	cervix
18	chr1:150984200-150997000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:150984200-150997000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:150984200-150997000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:150984200-150998800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:150984200-150999600	Weak transcription	NHEK	skin
23	chr1:150984200-151006400	Weak transcription	HMEC	breast
24	chr1:150986000-150997000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:150986000-151000800	Weak transcription	A549	lung
26	chr1:150986000-151003200	Weak transcription	Fetal Brain Male	brain
27	chr1:150986200-150997000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:150986200-150997000	Weak transcription	Brain Substantia Nigra	brain
29	chr1:150986200-150997000	Weak transcription	Right Ventricle	heart
30	chr1:150986200-150998600	Weak transcription	Small Intestine	intestine
31	chr1:150986200-150998800	Weak transcription	Gastric	stomach
32	chr1:150986200-150999200	Weak transcription	NHLF	lung
33	chr1:150986200-150999600	Weak transcription	Spleen	Spleen
34	chr1:150986200-151006200	Weak transcription	Pancreas	Pancrea
35	chr1:150986400-150996800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:150986400-150997000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr1:150986400-150997000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr1:150986800-150999400	Weak transcription	Colonic Mucosa	Colon
39	chr1:150987000-150996800	Weak transcription	Stomach Mucosa	stomach
40	chr1:150987000-150999200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr1:150987000-150999400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:150987400-150997000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr1:150989800-151010400	Strong transcription	Fetal Stomach	stomach
44	chr1:150990400-150996200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr1:150991000-150996800	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:150991000-150999600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:150991200-150996800	Weak transcription	Primary B cells from cord blood	blood
48	chr1:150991200-150996800	Weak transcription	K562	blood
49	chr1:150991200-150997000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:150991200-150997000	Weak transcription	Brain Angular Gyrus	brain

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