Variant report

Variant	rs11204945
Chromosome Location	chr1:152210698-152210699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10749670	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10888470	0.82[ASN][1000 genomes]
rs10888471	0.81[ASN][1000 genomes]
rs10888473	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10888475	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11204939	0.81[ASN][1000 genomes]
rs11204944	0.84[ASN][1000 genomes]
rs11204947	0.84[ASN][1000 genomes]
rs11204948	0.84[ASN][1000 genomes]
rs11204951	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11204952	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12748016	0.80[ASN][1000 genomes]
rs1390488	0.82[ASN][1000 genomes]
rs1466757	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1845791	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1969019	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2132418	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2338430	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2879174	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs36033453	0.84[ASN][1000 genomes]
rs4326625	0.82[ASN][1000 genomes]
rs4511113	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4845428	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4845430	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4845431	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4845750	0.82[ASN][1000 genomes]
rs4845751	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4845752	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6666382	0.84[ASN][1000 genomes]
rs6675889	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6676012	0.83[AFR][1000 genomes]
rs6678951	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7534716	0.82[ASN][1000 genomes]
rs7535078	0.80[ASN][1000 genomes]
rs7537637	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs991231	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv947506	chr1:152203216-152223222	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152207600-152215400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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