Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10789007	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10888937	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1118219	0.97[EUR][1000 genomes]
rs1118220	0.97[EUR][1000 genomes]
rs11206640	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11206643	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1165465	0.97[EUR][1000 genomes]
rs1165466	0.97[EUR][1000 genomes]
rs1165467	0.97[EUR][1000 genomes]
rs12085101	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12406907	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12409439	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1499661	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1499662	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1499666	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1499667	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1546245	0.85[AMR][1000 genomes]
rs2047543	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2221140	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs709396	0.99[EUR][1000 genomes]
rs769981	0.99[EUR][1000 genomes]
rs769982	0.99[EUR][1000 genomes]
rs769983	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56089000-56089600	Enhancers	Fetal Kidney	kidney
2	chr1:56089000-56090400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56089000-56104000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56089200-56089600	Weak transcription	Fetal Lung	lung
5	chr1:56089400-56089800	Enhancers	Fetal Heart	heart
6	chr1:56089400-56090200	Weak transcription	Ovary	ovary
7	chr1:56089400-56091800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:56089400-56092400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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