Variant report

Variant	rs11206775
Chromosome Location	chr1:56752311-56752312
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12026512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12031412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12062012	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12070360	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12409671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17113634	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs952133	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56745400-56757000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56748400-56759600	Weak transcription	Aorta	Aorta
3	chr1:56750000-56753400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56750200-56752600	Enhancers	Fetal Muscle Leg	muscle
5	chr1:56750200-56752800	Enhancers	Adipose Nuclei	Adipose
6	chr1:56750200-56752800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:56750200-56753000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:56751000-56752800	Enhancers	Psoas Muscle	Psoas
9	chr1:56751000-56753000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:56751000-56753200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:56751000-56753600	Enhancers	Placenta	Placenta
12	chr1:56751000-56753600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr1:56751200-56752800	Enhancers	Right Atrium	heart
14	chr1:56751200-56753400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:56751200-56753400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:56751200-56756000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:56751400-56756800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:56751400-56757600	Weak transcription	Pancreas	Pancrea
19	chr1:56751800-56756800	Weak transcription	Lung	lung
20	chr1:56752000-56752600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:56752000-56753200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:56752000-56756800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:56752000-56757000	Weak transcription	Fetal Stomach	stomach
24	chr1:56752000-56757000	Weak transcription	HSMMtube	muscle
25	chr1:56752200-56752600	Weak transcription	Left Ventricle	heart
26	chr1:56752200-56753000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:56752200-56753600	Weak transcription	HepG2	liver

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