Variant report

Variant	rs11206815
Chromosome Location	chr1:56922122-56922123
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10888972	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12063481	1.00[JPT][hapmap]
rs12075340	1.00[JPT][hapmap]
rs12563470	1.00[JPT][hapmap]
rs1261410	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1261412	1.00[CHB][hapmap]
rs1271160	0.85[AMR][1000 genomes]
rs1319274	1.00[CHB][hapmap]
rs1777276	1.00[CHB][hapmap]
rs1815487	0.80[ASN][1000 genomes]
rs1889145	0.91[EUR][1000 genomes]
rs1964940	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2184104	0.90[EUR][1000 genomes]
rs2780292	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2780857	0.84[ASN][1000 genomes]
rs4912286	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6421497	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6588633	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6588634	0.80[ASN][1000 genomes]
rs6588635	0.80[ASN][1000 genomes]
rs6684929	0.91[EUR][1000 genomes]
rs6687307	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6693179	0.91[EUR][1000 genomes]
rs6698602	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7365290	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7365293	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7368386	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7513178	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7513411	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7525346	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7527084	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7535319	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56905400-56942600	Weak transcription	Gastric	stomach
2	chr1:56912800-56922400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:56912800-56923400	Weak transcription	Spleen	Spleen
4	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
5	chr1:56915000-56922400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:56915200-56922400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:56915200-56935800	Weak transcription	NHLF	lung
8	chr1:56916200-56922200	Weak transcription	Lung	lung
9	chr1:56918000-56922200	Weak transcription	Small Intestine	intestine
10	chr1:56918000-56922600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:56918600-56926600	Weak transcription	Fetal Thymus	thymus
12	chr1:56919000-56923200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:56919200-56927200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:56919200-56930000	Weak transcription	NHDF-Ad	bronchial
15	chr1:56919600-56922200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:56919600-56922200	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:56919600-56922200	Weak transcription	Right Atrium	heart
18	chr1:56919600-56922200	Weak transcription	Right Ventricle	heart
19	chr1:56919600-56922400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:56919600-56922600	Weak transcription	Fetal Heart	heart
21	chr1:56919600-56922800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:56919600-56923400	Weak transcription	Left Ventricle	heart
23	chr1:56919600-56923600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:56919800-56922400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:56919800-56922400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:56919800-56922600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:56919800-56923200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:56919800-56926600	Weak transcription	Liver	Liver
29	chr1:56919800-56927000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:56919800-56934200	Weak transcription	Fetal Stomach	stomach
31	chr1:56920200-56922200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:56921200-56922200	Enhancers	Hela-S3	cervix
33	chr1:56922000-56922800	Enhancers	A549	lung
34	chr1:56922000-56923200	Enhancers	HepG2	liver
35	chr1:56922000-56923600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:56922000-56924400	Enhancers	HUVEC	blood vessel

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