Variant report

Variant	rs11206831
Chromosome Location	chr1:56963026-56963027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10493211	1.00[JPT][hapmap]
rs10789026	1.00[JPT][hapmap]
rs10888975	0.83[EUR][1000 genomes]
rs10888978	1.00[JPT][hapmap]
rs11206832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206835	1.00[JPT][hapmap]
rs11206838	1.00[JPT][hapmap]
rs11576602	1.00[JPT][hapmap]
rs11582172	1.00[JPT][hapmap]
rs11589246	0.83[EUR][1000 genomes]
rs12134109	1.00[JPT][hapmap]
rs12402226	1.00[JPT][hapmap]
rs12406517	1.00[JPT][hapmap]
rs1572057	1.00[JPT][hapmap]
rs1930761	0.83[EUR][1000 genomes]
rs3738570	1.00[JPT][hapmap]
rs3927762	1.00[JPT][hapmap]
rs61772577	0.81[AMR][1000 genomes]
rs61772590	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7528118	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7551402	1.00[JPT][hapmap]
rs8016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs869934	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56948800-56965200	Weak transcription	Brain Angular Gyrus	brain
2	chr1:56957400-56963800	Genic enhancers	NHDF-Ad	bronchial
3	chr1:56957400-56971800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:56957600-56971800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:56957800-56963800	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:56957800-56963800	Weak transcription	Small Intestine	intestine
7	chr1:56957800-56971800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:56957800-56975600	Weak transcription	Fetal Brain Female	brain
9	chr1:56958000-56975600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:56958000-56977000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:56958200-56963400	Strong transcription	Fetal Muscle Leg	muscle
12	chr1:56958200-56971600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:56958400-56968400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:56958600-56968000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:56958800-56964000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:56958800-56971600	Strong transcription	Fetal Muscle Trunk	muscle
17	chr1:56959000-56966200	Strong transcription	HSMM	muscle
18	chr1:56959200-56968000	Strong transcription	Osteobl	bone
19	chr1:56959200-56968400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:56959200-56969000	Genic enhancers	Liver	Liver
21	chr1:56959400-56963200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:56959400-56972000	Strong transcription	Fetal Stomach	stomach
23	chr1:56959600-56963400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:56959600-56963600	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr1:56959600-56967200	Weak transcription	Fetal Brain Male	brain
26	chr1:56959800-56963600	Strong transcription	NHLF	lung
27	chr1:56959800-56972800	Weak transcription	Dnd41	blood
28	chr1:56960000-56964200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:56960400-56967200	Weak transcription	K562	blood
30	chr1:56960800-56976000	Genic enhancers	HepG2	liver
31	chr1:56961000-56963600	Strong transcription	Thymus	Thymus
32	chr1:56961000-56964200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr1:56961200-56963600	Strong transcription	Fetal Intestine Large	intestine
34	chr1:56961200-56963800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
35	chr1:56961200-56964200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:56961200-56967600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:56961400-56963600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:56961400-56971400	Weak transcription	Primary B cells from cord blood	blood
39	chr1:56961400-56972600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:56961400-56972800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr1:56961600-56963600	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr1:56961600-56963600	Enhancers	HUVEC	blood vessel
43	chr1:56961600-56964000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr1:56961600-56971800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr1:56961800-56963200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:56961800-56963200	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr1:56961800-56963200	Weak transcription	Brain Substantia Nigra	brain
48	chr1:56961800-56964200	Enhancers	Stomach Mucosa	stomach
49	chr1:56961800-56965000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr1:56961800-56971600	Weak transcription	Colonic Mucosa	Colon

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