Variant report

Variant	rs11206876
Chromosome Location	chr1:57089455-57089456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10157962	1.00[AFR][1000 genomes]
rs11206874	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11206904	1.00[AMR][1000 genomes]
rs12060663	1.00[AMR][1000 genomes]
rs12081693	1.00[AMR][1000 genomes]
rs12085402	0.92[AFR][1000 genomes]
rs12089982	1.00[AMR][1000 genomes]
rs12090117	1.00[AMR][1000 genomes]
rs12094381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095026	1.00[AMR][1000 genomes]
rs13376460	1.00[AMR][1000 genomes]
rs2897036	1.00[AMR][1000 genomes]
rs3991779	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2762142	chr1:57082459-57094901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57083200-57091600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:57085800-57089600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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