Variant report

Variant	rs11206971
Chromosome Location	chr1:57555391-57555392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10430117	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206967	0.86[ASN][1000 genomes]
rs11206968	0.82[ASN][1000 genomes]
rs11206969	0.86[ASN][1000 genomes]
rs11206970	0.86[ASN][1000 genomes]
rs11206973	0.89[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.83[ASN][1000 genomes]
rs12025887	0.87[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs12026247	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs12028404	0.87[ASN][1000 genomes]
rs12043593	0.85[ASN][1000 genomes]
rs12043848	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs12140416	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs12565535	0.83[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap]
rs3729546	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs3738555	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3738556	0.83[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap]
rs3754260	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3754261	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs3754262	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3754263	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3768176	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3768177	0.83[ASN][1000 genomes]
rs3768183	0.86[ASN][1000 genomes]
rs3768184	0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3768185	0.86[ASN][1000 genomes]
rs3768187	0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs3768188	0.87[ASN][1000 genomes]
rs3768189	0.87[ASN][1000 genomes]
rs3768190	0.86[JPT][hapmap]
rs3768192	0.83[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap]
rs3768194	0.83[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap]
rs3820576	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs3820577	0.83[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap]
rs514550	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs6660463	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs6669702	0.83[CHD][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6674223	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs960501	0.83[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428752	chr1:57455083-57605082	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv10206	chr1:57552955-57559110	Enhancers Weak transcription Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57548800-57566600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57549600-57556000	Weak transcription	Right Ventricle	heart
3	chr1:57549600-57566600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:57550200-57555400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:57551400-57622000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:57553000-57557800	Weak transcription	Fetal Intestine Large	intestine
7	chr1:57553400-57555600	Weak transcription	Ovary	ovary
8	chr1:57554400-57556000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:57554400-57556800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:57554600-57556600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:57555000-57555400	Enhancers	Left Ventricle	heart
12	chr1:57555200-57555400	Flanking Active TSS	Fetal Heart	heart
13	chr1:57555200-57555400	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links