Variant report

Variant	rs11207090
Chromosome Location	chr1:58128119-58128120
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10443241	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10889059	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11207075	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11207080	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11800684	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11801131	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12123728	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12124076	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12125360	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12125452	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12129296	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17430851	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2103142	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4484949	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6675237	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72676991	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72676993	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72910551	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7522826	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7532516	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7554762	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7554847	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv871620	chr1:58127171-58157778	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58125000-58128400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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