Variant report

Variant	rs11207824
Chromosome Location	chr1:62202956-62202957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12060398	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067441	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082041	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000294	chr1:61746280-62350718	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62191400-62207400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:62201200-62203000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:62202200-62206400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:62202200-62207000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:62202200-62207200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:62202200-62207200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:62202200-62207200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:62202400-62207200	Weak transcription	Primary T cells from cord blood	blood
9	chr1:62202400-62207200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:62202400-62207200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:62202600-62207200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr1:62202800-62207000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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