Variant report

Variant	rs11209589
Chromosome Location	chr1:70552774-70552775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11209591	0.89[CEU][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes]
rs12026267	0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12033206	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039881	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv461806	chr1:70494216-70566981	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546454	chr1:70494216-70566981	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70536800-70554000	Weak transcription	Fetal Brain Female	brain
2	chr1:70537200-70555800	Weak transcription	Brain Anterior Caudate	brain
3	chr1:70538800-70555800	Weak transcription	NHDF-Ad	bronchial
4	chr1:70542000-70555600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:70542200-70556000	Weak transcription	Brain Germinal Matrix	brain
6	chr1:70546600-70559400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:70548000-70557600	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:70549600-70556000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:70550200-70558400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:70550400-70557400	Weak transcription	Brain Angular Gyrus	brain
11	chr1:70550400-70558200	Weak transcription	Fetal Brain Male	brain
12	chr1:70551000-70555800	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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