Variant report
| Variant | rs11209801 |
|---|---|
| Chromosome Location | chr1:72067202-72067203 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10493485 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10493486 | 0.85[AFR][1000 genomes] |
| rs10889921 | 0.97[EUR][1000 genomes] |
| rs11209800 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11209806 | 0.85[AFR][1000 genomes] |
| rs12021677 | 0.95[EUR][1000 genomes] |
| rs12139658 | 0.91[EUR][1000 genomes] |
| rs12564885 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12742274 | 0.93[EUR][1000 genomes] |
| rs12757229 | 0.90[EUR][1000 genomes] |
| rs1333998 | 0.91[EUR][1000 genomes] |
| rs1333999 | 0.91[EUR][1000 genomes] |
| rs1334000 | 0.91[EUR][1000 genomes] |
| rs1334001 | 0.91[EUR][1000 genomes] |
| rs1335223 | 0.91[EUR][1000 genomes] |
| rs1335224 | 0.88[EUR][1000 genomes] |
| rs1517752 | 0.89[EUR][1000 genomes] |
| rs17091560 | 0.85[AFR][1000 genomes] |
| rs1855647 | 0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2184232 | 0.97[EUR][1000 genomes] |
| rs4649941 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6424431 | 0.91[EUR][1000 genomes] |
| rs6424432 | 0.91[EUR][1000 genomes] |
| rs6424433 | 0.91[EUR][1000 genomes] |
| rs6656539 | 0.91[EUR][1000 genomes] |
| rs6664443 | 0.89[EUR][1000 genomes] |
| rs6668345 | 0.89[EUR][1000 genomes] |
| rs6700555 | 0.89[EUR][1000 genomes] |
| rs7553565 | 0.91[EUR][1000 genomes] |
| rs928615 | 0.88[EUR][1000 genomes] |
| rs951950 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949599 | chr1:71655652-72327802 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007250 | chr1:71998391-72350683 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv534992 | chr1:71998391-72350683 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv948821 | chr1:72049987-72477221 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv1003446 | chr1:72060680-72419918 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:72054800-72071800 | Weak transcription | Colon Smooth Muscle | Colon |
| 2 | chr1:72055000-72075800 | Weak transcription | Stomach Smooth Muscle | stomach |
| 3 | chr1:72067200-72067400 | Enhancers | Primary B cells from peripheral blood | blood |
