Variant report

Variant	rs112101557
Chromosome Location	chr11:73309114-73309115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73307696..73311155-chr11:73356118..73358808,4	MCF-7	breast:
2	chr11:73289699..73292318-chr11:73308150..73310462,2	K562	blood:
3	chr11:73308527..73310864-chr11:73370877..73373752,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231726	Chromatin interaction
ENSG00000021300	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv20896	chr11:73306779-73309297	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3384593	chr11:73307854-73310302	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73307400-73310200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:73307800-73310400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr11:73307800-73310400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:73308000-73310200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:73308000-73310400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:73308200-73309800	Active TSS	Fetal Brain Female	brain
7	chr11:73308200-73310200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:73308200-73310200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:73308200-73310200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:73308200-73310400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr11:73308400-73309800	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr11:73308400-73309800	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr11:73308400-73310000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:73308400-73310000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:73308400-73310000	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr11:73308400-73310000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:73308400-73310000	Active TSS	Aorta	Aorta
18	chr11:73308400-73310000	Active TSS	Small Intestine	intestine
19	chr11:73308400-73310000	Bivalent/Poised TSS	HepG2	liver
20	chr11:73308400-73310200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:73308400-73310200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:73308400-73310200	Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr11:73308400-73310200	Active TSS	Brain Germinal Matrix	brain
24	chr11:73308400-73310200	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr11:73308400-73310200	Active TSS	NHDF-Ad	bronchial
26	chr11:73308400-73310200	Active TSS	NHLF	lung
27	chr11:73308400-73310400	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr11:73308400-73310400	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr11:73308400-73310400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:73308400-73310400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:73308400-73310400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:73308400-73310400	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr11:73308400-73310400	Active TSS	Psoas Muscle	Psoas
34	chr11:73308400-73310400	Active TSS	HSMMtube	muscle
35	chr11:73308400-73311000	Active TSS	GM12878-XiMat	blood
36	chr11:73308600-73309200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr11:73308600-73309400	Weak transcription	Fetal Brain Male	brain
38	chr11:73308600-73309600	Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr11:73308600-73309600	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr11:73308600-73309800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:73308600-73309800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:73308600-73309800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:73308600-73309800	Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr11:73308600-73309800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr11:73308600-73309800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr11:73308600-73309800	Active TSS	Fetal Lung	lung
47	chr11:73308600-73309800	Active TSS	Hela-S3	cervix
48	chr11:73308600-73309800	Active TSS	HUVEC	blood vessel
49	chr11:73308600-73309800	Active TSS	Monocytes-CD14+_RO01746	blood
50	chr11:73308600-73309800	Active TSS	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links