Variant report

Variant	rs11210996
Chromosome Location	chr1:44887362-44887363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3866645	0.96[ASN][1000 genomes]
rs6663541	0.94[ASN][1000 genomes]
rs6700921	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533037	chr1:44361728-45333408	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv1010785	chr1:44407804-44974324	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv534938	chr1:44407804-44974324	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv829715	chr1:44772309-44947790	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1004861	chr1:44843654-45210176	Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases
6	nsv534940	chr1:44843654-45210176	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:44884200-44887400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:44884200-44889400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:44884400-44888400	Weak transcription	Right Ventricle	heart
4	chr1:44884400-44890200	Enhancers	Brain Cingulate Gyrus	brain
5	chr1:44884400-44890800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:44884600-44887400	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:44885600-44889400	Enhancers	Brain Substantia Nigra	brain
8	chr1:44885800-44888400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr1:44886000-44888200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:44886200-44888600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:44886200-44889400	Enhancers	Brain Hippocampus Middle	brain
12	chr1:44886400-44888400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr1:44886400-44891200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:44886400-44891800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:44886600-44887400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:44886600-44888000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr1:44886600-44888200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr1:44886800-44887400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:44886800-44888000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:44886800-44888400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
21	chr1:44886800-44888600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr1:44886800-44889400	Enhancers	Brain Anterior Caudate	brain
23	chr1:44886800-44889800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:44886800-44891400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr1:44887000-44888600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:44887000-44888800	Enhancers	Fetal Heart	heart
27	chr1:44887000-44890600	Enhancers	HUVEC	blood vessel
28	chr1:44887200-44888000	Enhancers	HSMMtube	muscle
29	chr1:44887200-44888400	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr1:44887200-44893200	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links