Variant report

Variant	rs11211291
Chromosome Location	chr1:46960524-46960525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:46950781..46953808-chr1:46958999..46962653,3	K562	blood:
2	chr1:46959482..46962017-chr1:46963063..46965682,2	K562	blood:
3	chr1:46954039..46957769-chr1:46958689..46962771,8	K562	blood:
4	chr1:46946474..46949627-chr1:46956674..46960959,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11211292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211294	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211296	0.85[AFR][1000 genomes]
rs11211297	0.85[AFR][1000 genomes]
rs11801669	0.85[AFR][1000 genomes]
rs11801991	0.81[AFR][1000 genomes]
rs11803907	0.85[AFR][1000 genomes]
rs11803942	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11806495	0.85[AFR][1000 genomes]
rs12058191	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12066175	0.87[AFR][1000 genomes]
rs12067517	0.85[AFR][1000 genomes]
rs12067566	0.85[AFR][1000 genomes]
rs12073541	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12089822	0.83[AFR][1000 genomes]
rs12562748	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564461	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs12566085	0.81[ASN][1000 genomes]
rs12567122	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12567368	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12567374	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs12567650	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41294766	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4504836	0.85[AFR][1000 genomes]
rs57363509	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58158564	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58513168	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72892772	1.00[ASN][1000 genomes]
rs7551162	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942251	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761743	chr1:46339858-47026743	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001455	chr1:46828004-47326539	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv534950	chr1:46828004-47326539	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1000562	chr1:46832451-47027044	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1015045	chr1:46910546-47067492	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv534952	chr1:46910546-47067492	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1009193	chr1:46939999-47085667	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46956000-46960600	Weak transcription	Gastric	stomach
2	chr1:46956600-46960800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:46956800-46960600	Weak transcription	Pancreas	Pancrea
4	chr1:46958200-46960800	Weak transcription	K562	blood
5	chr1:46959600-46960800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:46960400-46960600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
7	chr1:46960400-46960600	Bivalent Enhancer	Duodenum Mucosa	Duodenum

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