Variant report

Variant	rs11211351
Chromosome Location	chr1:47200261-47200262
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47198906..47202020-chr1:47205382..47209037,4	K562	blood:

Variant related genes	Relation type
ENSG00000236476	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10890412	0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10890413	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11211334	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11211339	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11211340	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11211353	0.82[AMR][1000 genomes]
rs1139759	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12029031	0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12038572	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12048954	0.83[EUR][1000 genomes]
rs12118483	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12138338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12142631	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12733214	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1440484	0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2007344	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2275380	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3737729	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4660950	0.81[EUR][1000 genomes]
rs4660957	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001455	chr1:46828004-47326539	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv534950	chr1:46828004-47326539	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1013048	chr1:47132831-47377364	Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv534955	chr1:47132831-47377364	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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