Variant report

Variant	rs11211436
Chromosome Location	chr1:47551273-47551274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1039468	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11211420	0.82[JPT][hapmap]
rs11211424	0.84[JPT][hapmap]
rs11211441	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11211445	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11582907	0.82[JPT][hapmap]
rs11584372	0.81[JPT][hapmap]
rs12022219	0.80[EUR][1000 genomes]
rs12026359	0.95[CEU][hapmap]
rs12030385	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12040022	0.80[EUR][1000 genomes]
rs12041262	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12041324	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12045381	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12140891	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12141009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12406683	0.83[JPT][hapmap]
rs1502909	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1553390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17102972	0.84[JPT][hapmap]
rs17102977	0.84[JPT][hapmap]
rs17102978	0.82[JPT][hapmap]
rs1827473	0.87[JPT][hapmap];0.85[AMR][1000 genomes]
rs1847225	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1986925	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2036462	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2292059	0.88[JPT][hapmap]
rs2292060	0.82[JPT][hapmap]
rs2897114	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4926728	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4926776	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55909645	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66753730	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6682257	0.82[EUR][1000 genomes]
rs72637973	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9699826	0.82[JPT][hapmap]
rs9699991	0.84[JPT][hapmap]
rs9701888	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9793989	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009338	chr1:47358532-47555253	Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2763300	chr1:47358532-47628774	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916813	chr1:47435635-47666179	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv870705	chr1:47533705-47620126	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv871010	chr1:47533705-47637999	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv870899	chr1:47548974-47637999	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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