Variant report

Variant	rs11211821
Chromosome Location	chr11:106466094-106466095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17105845	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1791599	0.81[ASN][1000 genomes]
rs1791600	0.81[ASN][1000 genomes]
rs1793067	0.81[ASN][1000 genomes]
rs1793068	0.81[ASN][1000 genomes]
rs2105786	0.82[ASN][1000 genomes]
rs58427815	0.94[ASN][1000 genomes]
rs66852810	0.96[ASN][1000 genomes]
rs72981965	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72983814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1038836	chr11:106459674-106514773	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1054602	chr11:106460454-106514773	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106464600-106466200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr11:106465400-106466200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:106465600-106466200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr11:106465600-106466200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:106465800-106466200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:106465800-106466200	Flanking Active TSS	Dnd41	blood
7	chr11:106465800-106467000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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