Variant report

Variant	rs11212292
Chromosome Location	chr11:107463936-107463937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107459880..107461439-chr11:107463535..107466067,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AP001024.2-2	chr11:107463416-107463949	NR_028328

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10890744	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890745	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890746	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1261740	0.94[ASN][1000 genomes]
rs1939903	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2509204	0.92[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3132818	0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4085361	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[YRI][hapmap];0.98[ASN][1000 genomes]
rs4754234	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754235	0.92[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754236	0.92[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754237	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs531097	1.00[ASW][hapmap];0.88[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs532859	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs537974	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs539814	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs602788	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs614759	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651300	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6588970	0.92[CHB][hapmap];0.97[CHD][hapmap];0.86[ASN][1000 genomes]
rs7943671	0.92[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7943986	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107460400-107465200	Active TSS	Brain Anterior Caudate	brain
2	chr11:107460600-107465000	Active TSS	Brain Angular Gyrus	brain
3	chr11:107461200-107464600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:107462600-107464000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:107463000-107464000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:107463000-107465200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:107463200-107464000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr11:107463200-107464200	Bivalent/Poised TSS	Fetal Brain Male	brain
9	chr11:107463200-107482600	Weak transcription	HSMMtube	muscle
10	chr11:107463400-107464000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
11	chr11:107463400-107465000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:107463600-107464000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chr11:107463600-107464600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr11:107463600-107465000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr11:107463800-107464400	Bivalent/Poised TSS	Fetal Brain Female	brain
16	chr11:107463800-107464800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr11:107463800-107464800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
18	chr11:107463800-107464800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr11:107463800-107464800	Weak transcription	HSMM	muscle

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