Variant report

Variant	rs11212726
Chromosome Location	chr11:108463333-108463334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:108092600..108095376-chr11:108462934..108465266,2	MCF-7	breast:
2	chr11:108367402..108370460-chr11:108461670..108466033,4	K562	blood:
3	chr11:108457153..108459438-chr11:108461120..108463498,2	MCF-7	breast:
4	chr11:108365650..108370333-chr11:108462736..108466617,7	K562	blood:
5	chr11:108366826..108370827-chr11:108463038..108466989,6	MCF-7	breast:
6	chr11:108332332..108333917-chr11:108462867..108465354,2	K562	blood:
7	chr11:108091790..108094967-chr11:108462852..108466169,3	K562	blood:
8	chr11:108422127..108426041-chr11:108463043..108466411,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166323	Chromatin interaction
ENSG00000149311	Chromatin interaction
ENSG00000149308	Chromatin interaction
ENSG00000110723	Chromatin interaction
ENSG00000178202	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10466558	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1072877	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10789671	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10890865	0.81[EUR][1000 genomes]
rs10890866	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10890868	0.90[ASN][1000 genomes]
rs11212716	0.91[ASN][1000 genomes]
rs11212723	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11212728	0.96[ASN][1000 genomes]
rs12276845	0.92[ASN][1000 genomes]
rs12575739	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12791136	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12799294	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2101141	0.94[ASN][1000 genomes]
rs34403786	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35771441	0.92[ASN][1000 genomes]
rs55732976	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61913927	0.91[ASN][1000 genomes]
rs61913929	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898387	chr11:108440814-108535792	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108458200-108463400	Weak transcription	Colonic Mucosa	Colon
2	chr11:108460000-108463400	Weak transcription	HSMM	muscle
3	chr11:108460200-108463400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:108461600-108463400	Weak transcription	Psoas Muscle	Psoas
5	chr11:108462200-108463400	Active TSS	Placenta	Placenta
6	chr11:108462200-108464400	Active TSS	Placenta Amnion	Placenta Amnion
7	chr11:108462400-108463400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:108462400-108463400	Enhancers	Gastric	stomach
9	chr11:108462400-108463600	Flanking Active TSS	K562	blood
10	chr11:108462600-108463400	Active TSS	Rectal Mucosa Donor 31	rectum
11	chr11:108462600-108463400	Enhancers	Stomach Mucosa	stomach
12	chr11:108462600-108463800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr11:108462600-108464800	Active TSS	Brain Anterior Caudate	brain
14	chr11:108462600-108465000	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr11:108462800-108463400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:108462800-108463400	Enhancers	Pancreas	Pancrea
17	chr11:108462800-108463600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:108462800-108463600	Flanking Active TSS	GM12878-XiMat	blood
19	chr11:108462800-108463800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
20	chr11:108462800-108463800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr11:108462800-108464400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr11:108462800-108464800	Active TSS	Fetal Kidney	kidney
23	chr11:108462800-108465000	Active TSS	Rectal Smooth Muscle	rectum
24	chr11:108463000-108463400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr11:108463000-108463400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:108463000-108463400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:108463000-108463400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr11:108463000-108463400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr11:108463000-108463400	Bivalent Enhancer	Fetal Intestine Small	intestine
30	chr11:108463000-108463600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:108463000-108463800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
32	chr11:108463000-108463800	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr11:108463000-108464400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr11:108463000-108464600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:108463000-108464600	Active TSS	HSMMtube	muscle
36	chr11:108463200-108463400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:108463200-108463400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr11:108463200-108463400	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr11:108463200-108463400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr11:108463200-108463400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:108463200-108463400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:108463200-108463400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:108463200-108463400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:108463200-108463400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:108463200-108463400	Enhancers	Adipose Nuclei	Adipose
46	chr11:108463200-108463400	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr11:108463200-108463400	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr11:108463200-108463400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
49	chr11:108463200-108463400	Bivalent/Poised TSS	Fetal Brain Male	brain
50	chr11:108463200-108463400	Bivalent/Poised TSS	Fetal Stomach	stomach

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