Variant report

Variant	rs11212775
Chromosome Location	chr11:108624248-108624249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108617140..108620496-chr11:108622218..108627309,5	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7934946	0.88[AFR][1000 genomes]
rs7939884	0.84[AFR][1000 genomes]
rs7948143	0.83[AFR][1000 genomes]
rs7951395	0.84[AFR][1000 genomes]
rs9888174	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108581600-108626600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:108594400-108625400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:108604600-108625600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:108604600-108625800	Weak transcription	Primary T cells from cord blood	blood
5	chr11:108604800-108627800	Weak transcription	Left Ventricle	heart
6	chr11:108605400-108625400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:108605800-108663800	Weak transcription	K562	blood
8	chr11:108606000-108627400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:108607600-108644600	Weak transcription	Aorta	Aorta
10	chr11:108607800-108628200	Weak transcription	Liver	Liver
11	chr11:108611000-108625400	Weak transcription	NHLF	lung
12	chr11:108612200-108627400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:108612600-108626600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:108612800-108630200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:108614600-108628200	Weak transcription	Pancreas	Pancrea
16	chr11:108614600-108638600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:108615600-108657000	Weak transcription	Primary B cells from cord blood	blood
18	chr11:108617600-108625000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:108617600-108625400	Weak transcription	HSMM	muscle
20	chr11:108617600-108627400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:108620400-108625400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:108621400-108625400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:108622400-108629600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:108623000-108625400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr11:108623000-108628600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:108623400-108625200	Weak transcription	Osteobl	bone
27	chr11:108623400-108625400	Weak transcription	GM12878-XiMat	blood
28	chr11:108623400-108625400	Weak transcription	NHDF-Ad	bronchial
29	chr11:108623400-108625600	Weak transcription	Psoas Muscle	Psoas
30	chr11:108623600-108625200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:108623800-108624800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:108623800-108625400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:108624000-108625400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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