Variant report

Variant	rs11212913
Chromosome Location	chr11:108947644-108947645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11212911	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11212914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417963	0.90[AFR][1000 genomes]
rs1949052	0.93[ASN][1000 genomes]
rs35447002	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11212913	DDX10	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108944400-108948000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:108946600-108948600	Enhancers	Fetal Muscle Leg	muscle
3	chr11:108946800-108948000	Enhancers	Adipose Nuclei	Adipose
4	chr11:108946800-108948200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:108946800-108948200	Enhancers	Fetal Heart	heart
6	chr11:108947000-108947800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:108947000-108947800	Weak transcription	Right Ventricle	heart
8	chr11:108947000-108948200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:108947200-108948200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr11:108947400-108948600	Enhancers	Fetal Thymus	thymus
11	chr11:108947600-108948400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:108947600-108948600	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links