Variant report

Variant	rs112129406
Chromosome Location	chr14:65012559-65012560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65006007..65010466-chr14:65011368..65016510,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126803	Chromatin interaction
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564907	chr14:65011509-65018663	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65008600-65016200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:65009000-65016200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:65009400-65013000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:65009400-65016600	Weak transcription	Gastric	stomach
5	chr14:65009600-65016200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:65010200-65015600	Weak transcription	Psoas Muscle	Psoas
7	chr14:65010400-65015800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:65010400-65015800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:65010400-65016600	Weak transcription	Aorta	Aorta
10	chr14:65011200-65015800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:65011400-65012600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr14:65011400-65015800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:65011400-65016000	Weak transcription	NHDF-Ad	bronchial
14	chr14:65011600-65016000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:65011600-65016000	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:65011600-65016000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:65011600-65016000	Weak transcription	NHLF	lung
18	chr14:65011600-65016200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:65011800-65012600	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr14:65011800-65014000	Weak transcription	A549	lung
21	chr14:65011800-65015800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:65012000-65013000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr14:65012000-65013000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:65012000-65015400	Weak transcription	Brain Substantia Nigra	brain
25	chr14:65012000-65016000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:65012000-65016200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:65012000-65016200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr14:65012000-65016600	Weak transcription	Brain Angular Gyrus	brain
29	chr14:65012200-65012600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:65012200-65012600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr14:65012200-65012800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr14:65012200-65016000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:65012400-65012600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr14:65012400-65012800	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr14:65012400-65013400	Weak transcription	Brain Hippocampus Middle	brain
36	chr14:65012400-65015400	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links