Variant report

Variant	rs11214602
Chromosome Location	chr11:113277551-113277552
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DRD2-4	chr11:113276482-113278538	NONHSAT024247

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1003641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1076562	0.95[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs1079594	0.82[YRI][hapmap]
rs1079595	0.82[YRI][hapmap]
rs10891545	0.81[JPT][hapmap]
rs11214598	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1124492	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1124493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12224538	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1800497	0.81[CHB][hapmap]
rs2002453	0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs2005313	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2242592	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2245805	0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs2276070	0.81[JPT][hapmap]
rs2283265	0.82[YRI][hapmap]
rs2471856	0.89[ASN][1000 genomes]
rs2511521	0.92[ASN][1000 genomes]
rs2587550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2587552	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2734841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2734842	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2859543	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2859544	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2859545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4586205	0.85[JPT][hapmap]
rs4590907	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs4938014	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs4938016	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61492892	0.83[ASN][1000 genomes]
rs6275	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6278	0.81[CHB][hapmap]
rs6279	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7122228	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs719803	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1040152	chr11:113258065-113285916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11214602	TTC12	cis	Heart Left Ventricle	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113258800-113287400	Weak transcription	Gastric	stomach
2	chr11:113273000-113277600	Weak transcription	Right Ventricle	heart
3	chr11:113274600-113278600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:113275400-113277600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:113276200-113278200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:113277000-113279400	Weak transcription	Esophagus	oesophagus
7	chr11:113277200-113278200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:113277200-113278200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:113277200-113278800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:113277400-113277600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:113277400-113277800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links