Variant report

Variant	rs11217784
Chromosome Location	chr11:120151667-120151668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120126805..120129444-chr11:120151052..120153033,2	MCF-7	breast:
2	chr11:120130830..120132794-chr11:120150514..120152868,2	K562	blood:
3	chr11:120145243..120148193-chr11:120148457..120151899,3	MCF-7	breast:
4	chr11:120151169..120153171-chr11:120166306..120168232,2	K562	blood:
5	chr11:120149912..120152911-chr11:120168871..120171487,3	K562	blood:
6	chr11:120141543..120143317-chr11:120150505..120153667,3	K562	blood:
7	chr11:120105904..120109719-chr11:120147377..120154019,10	K562	blood:
8	chr11:120144746..120147673-chr11:120150334..120152904,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10437691	1.00[AMR][1000 genomes]
rs10466597	1.00[AMR][1000 genomes]
rs11217780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11217894	1.00[AMR][1000 genomes]
rs11826850	1.00[AMR][1000 genomes]
rs12272851	1.00[AMR][1000 genomes]
rs12273736	1.00[AMR][1000 genomes]
rs12279381	1.00[AMR][1000 genomes]
rs12280403	1.00[AMR][1000 genomes]
rs12283229	1.00[AMR][1000 genomes]
rs12285146	1.00[AMR][1000 genomes]
rs12286309	1.00[AMR][1000 genomes]
rs12288495	1.00[AMR][1000 genomes]
rs12288900	1.00[AMR][1000 genomes]
rs12290756	1.00[AMR][1000 genomes]
rs12291269	1.00[AMR][1000 genomes]
rs12294024	1.00[AMR][1000 genomes]
rs12294303	1.00[AMR][1000 genomes]
rs17123749	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120137400-120152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:120149200-120152800	Enhancers	Hela-S3	cervix
3	chr11:120150000-120153000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:120150200-120152600	Enhancers	NHEK	skin
5	chr11:120150200-120154200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:120150400-120152400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:120150400-120152800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:120150400-120153000	Enhancers	Fetal Heart	heart
9	chr11:120150600-120152600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:120150600-120152600	Enhancers	Placenta	Placenta
11	chr11:120151000-120152600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:120151200-120152400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:120151400-120151800	Enhancers	Right Ventricle	heart
14	chr11:120151400-120151800	Flanking Active TSS	HepG2	liver
15	chr11:120151400-120152200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:120151400-120152200	Enhancers	Fetal Muscle Trunk	muscle
17	chr11:120151400-120152400	Enhancers	Fetal Stomach	stomach
18	chr11:120151400-120152400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:120151400-120152600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:120151400-120152600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:120151400-120152600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:120151400-120152600	Enhancers	Left Ventricle	heart
23	chr11:120151400-120152600	Enhancers	Stomach Smooth Muscle	stomach
24	chr11:120151400-120152800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr11:120151400-120153000	Enhancers	Right Atrium	heart
26	chr11:120151600-120152200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:120151600-120152400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr11:120151600-120152400	Enhancers	Fetal Muscle Leg	muscle
29	chr11:120151600-120152600	Enhancers	Lung	lung
30	chr11:120151600-120152800	Flanking Active TSS	K562	blood
31	chr11:120151600-120153800	Weak transcription	Esophagus	oesophagus

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