Variant report

Variant	rs11218222
Chromosome Location	chr11:121112467-121112468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10892695	0.80[ASN][1000 genomes]
rs1941297	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1941298	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7129197	0.80[ASN][1000 genomes]
rs948381	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv975986	chr11:121106081-121115293	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121104600-121113200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121104800-121113200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:121105600-121112800	Enhancers	Fetal Muscle Leg	muscle
4	chr11:121105800-121113800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:121106600-121112800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:121107800-121116800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:121108600-121116400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:121109400-121117000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:121110000-121112600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:121110000-121112800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:121110800-121112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:121111000-121112600	Enhancers	Esophagus	oesophagus
13	chr11:121111000-121113000	Enhancers	Fetal Stomach	stomach
14	chr11:121111200-121112800	Enhancers	Fetal Lung	lung
15	chr11:121111400-121112600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:121111400-121113200	Flanking Active TSS	HSMMtube	muscle
17	chr11:121111800-121114200	Weak transcription	Right Atrium	heart
18	chr11:121112000-121112600	Enhancers	Liver	Liver
19	chr11:121112000-121112600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr11:121112000-121112800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:121112000-121112800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:121112000-121112800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr11:121112000-121113200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:121112200-121112800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:121112200-121112800	Flanking Active TSS	HSMM	muscle
26	chr11:121112200-121114400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:121112200-121114400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:121112400-121112600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:121112400-121112600	Enhancers	Ovary	ovary
30	chr11:121112400-121112800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:121112400-121113200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:121112400-121113200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr11:121112400-121113200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:121112400-121113400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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