Variant report

Variant	rs112192450
Chromosome Location	chr7:140783279-140783280
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140772460..140775375-chr7:140783158..140785995,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261115	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889248	chr7:140754785-140809205	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140777000-140785000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:140778000-140793200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:140778800-140794400	Weak transcription	Fetal Brain Female	brain
4	chr7:140782600-140786400	Weak transcription	Brain Germinal Matrix	brain
5	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
6	chr7:140783200-140783400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr7:140783200-140783400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:140783200-140783400	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
10	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:140783200-140783400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
14	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
15	chr7:140783200-140783400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
16	chr7:140783200-140783400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
17	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr7:140783200-140783400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:140783200-140783400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:140783200-140783400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
21	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
22	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
23	chr7:140783200-140783400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
24	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
25	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
26	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:140783200-140783400	Bivalent/Poised TSS	Primary T helper cells fromperipheralblood	blood
28	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
29	chr7:140783200-140783400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
30	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:140783200-140783400	Bivalent/Poised TSS	Liver	Liver
32	chr7:140783200-140783400	ZNF genes & repeats	Brain Angular Gyrus	brain
33	chr7:140783200-140783400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
34	chr7:140783200-140783400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
35	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
36	chr7:140783200-140783400	ZNF genes & repeats	Colon Smooth Muscle	Colon
37	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
38	chr7:140783200-140783400	ZNF genes & repeats	Fetal Brain Male	brain
39	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
40	chr7:140783200-140783400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
41	chr7:140783200-140783400	ZNF genes & repeats	Gastric	stomach
42	chr7:140783200-140783400	ZNF genes & repeats	Pancreas	Pancrea
43	chr7:140783200-140783400	Flanking Active TSS	Psoas Muscle	Psoas
44	chr7:140783200-140783400	Bivalent Enhancer	Right Ventricle	heart
45	chr7:140783200-140783400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
46	chr7:140783200-140783400	Bivalent/Poised TSS	Small Intestine	intestine
47	chr7:140783200-140783400	Enhancers	Thymus	Thymus
48	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Spleen	Spleen
49	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	Dnd41	blood
50	chr7:140783200-140783400	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood

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