Variant report

Variant	rs1122073
Chromosome Location	chr17:15058236-15058237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:14829340..14831544-chr17:15056657..15059444,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1003402	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10459907	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9896003	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv907700	chr17:15026800-15059276	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv457680	chr17:15028005-15058236	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv457681	chr17:15028005-15058236	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv574432	chr17:15028005-15058236	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv574433	chr17:15034841-15058236	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv457682	chr17:15034841-15059276	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv457683	chr17:15034841-15059276	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv574434	chr17:15034841-15059276	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv574435	chr17:15034841-15060382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv907701	chr17:15034841-15060382	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv907702	chr17:15034841-15065191	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv1990	chr17:15041267-15094044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
16	nsv9496	chr17:15043381-15059150	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3314561	chr17:15043780-15058817	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3314559	chr17:15043812-15058792	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv4607	chr17:15043817-15058764	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3314562	chr17:15043838-15058745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3314560	chr17:15043879-15058744	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv498869	chr17:15043901-15058721	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3314564	chr17:15043902-15058721	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
24	nsv1064535	chr17:15043914-15058991	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv2422017	chr17:15043926-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv433305	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv457684	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv457686	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv457687	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv457688	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
31	nsv457689	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	nsv457690	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv457691	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv457692	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv574436	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv817752	chr17:15043999-15058236	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv438272	chr17:15043999-15058525	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
38	nsv574437	chr17:15043999-15059276	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
39	nsv574438	chr17:15043999-15060382	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
40	nsv457693	chr17:15043999-15060607	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
41	nsv457694	chr17:15043999-15060607	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
42	nsv574439	chr17:15043999-15060607	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
43	nsv827894	chr17:15044311-15058744	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
44	nsv514825	chr17:15044533-15058664	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	esv3315493	chr17:15052427-15058525	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
46	esv3315494	chr17:15052427-15058525	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15057600-15059000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr17:15058000-15058800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr17:15058000-15060800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr17:15058000-15061200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:15058200-15058600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:15058200-15058800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:15058200-15058800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:15058200-15059200	Enhancers	Osteobl	bone
9	chr17:15058200-15059600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links