Variant report

Variant	rs112220620
Chromosome Location	chrX:5073588-5073589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869027	chrX:5052974-6043003	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2752328	chrX:5058980-5587394	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3349820	chrX:5071902-5074150	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:5073000-5073800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chrX:5073200-5073800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chrX:5073200-5073800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chrX:5073200-5073800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chrX:5073200-5074000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chrX:5073200-5074000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chrX:5073200-5074000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chrX:5073200-5074000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chrX:5073200-5074800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chrX:5073200-5075400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chrX:5073400-5073800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links