Variant report

Variant	rs11224463
Chromosome Location	chr11:100682797-100682798
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10895017	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224444	1.00[ASN][1000 genomes]
rs11224451	1.00[ASN][1000 genomes]
rs11224453	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11224455	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224456	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224458	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224459	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11224462	0.81[EUR][1000 genomes]
rs11224466	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224468	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11224470	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12361454	0.96[ASN][1000 genomes]
rs17095535	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs495604	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs515584	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs545547	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57657599	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs630425	0.93[ASN][1000 genomes]
rs7933429	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7941596	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100660400-100683600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:100663000-100691800	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:100667200-100685200	Weak transcription	Primary B cells from cord blood	blood
4	chr11:100670000-100697400	Weak transcription	Placenta	Placenta
5	chr11:100673600-100687600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:100680000-100684000	Weak transcription	Fetal Intestine Large	intestine
7	chr11:100680200-100683400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:100680200-100683600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:100680200-100684000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:100680200-100686200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:100680400-100683600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:100680400-100687400	Weak transcription	Fetal Heart	heart
13	chr11:100680600-100683400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:100680600-100683400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:100680600-100683600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:100680600-100687400	Weak transcription	Left Ventricle	heart
17	chr11:100680600-100689000	Weak transcription	Psoas Muscle	Psoas
18	chr11:100680600-100691800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:100680800-100687400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:100680800-100696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:100681000-100685800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:100681200-100684200	Enhancers	Liver	Liver
23	chr11:100681200-100698000	Weak transcription	Stomach Mucosa	stomach
24	chr11:100681400-100683600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:100681400-100701000	Weak transcription	HSMM	muscle
26	chr11:100681800-100685200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:100682000-100687400	Weak transcription	NHEK	skin
28	chr11:100682000-100688400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:100682600-100684200	Enhancers	Fetal Intestine Small	intestine

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