Variant report

Variant	rs11224465
Chromosome Location	chr11:100685769-100685770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11224332	1.00[AMR][1000 genomes]
rs11224341	1.00[AMR][1000 genomes]
rs11224343	1.00[AMR][1000 genomes]
rs11224346	1.00[AMR][1000 genomes]
rs11224385	1.00[AMR][1000 genomes]
rs11224428	1.00[AMR][1000 genomes]
rs11224429	1.00[AMR][1000 genomes]
rs11224438	1.00[AMR][1000 genomes]
rs11224525	1.00[AMR][1000 genomes]
rs12274762	1.00[AMR][1000 genomes]
rs12275133	1.00[AMR][1000 genomes]
rs12277269	1.00[AMR][1000 genomes]
rs12278938	1.00[AMR][1000 genomes]
rs12279270	1.00[AMR][1000 genomes]
rs12279931	1.00[AMR][1000 genomes]
rs12281097	1.00[AMR][1000 genomes]
rs12286434	1.00[AMR][1000 genomes]
rs12286625	1.00[AMR][1000 genomes]
rs12287226	1.00[AMR][1000 genomes]
rs12295600	1.00[AMR][1000 genomes]
rs56805393	1.00[AMR][1000 genomes]
rs61104011	1.00[AMR][1000 genomes]
rs73565305	1.00[AMR][1000 genomes]
rs73565310	1.00[AMR][1000 genomes]
rs73565331	1.00[AMR][1000 genomes]
rs73565337	1.00[AMR][1000 genomes]
rs73565348	1.00[AMR][1000 genomes]
rs73567534	1.00[AMR][1000 genomes]
rs73571424	1.00[AMR][1000 genomes]
rs73573332	1.00[AMR][1000 genomes]
rs73575539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100663000-100691800	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:100670000-100697400	Weak transcription	Placenta	Placenta
3	chr11:100673600-100687600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:100680200-100686200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:100680400-100687400	Weak transcription	Fetal Heart	heart
6	chr11:100680600-100687400	Weak transcription	Left Ventricle	heart
7	chr11:100680600-100689000	Weak transcription	Psoas Muscle	Psoas
8	chr11:100680600-100691800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:100680800-100687400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:100680800-100696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:100681000-100685800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:100681200-100698000	Weak transcription	Stomach Mucosa	stomach
13	chr11:100681400-100701000	Weak transcription	HSMM	muscle
14	chr11:100682000-100687400	Weak transcription	NHEK	skin
15	chr11:100682000-100688400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:100684000-100691000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:100684000-100691800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:100684200-100688800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:100684200-100689000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:100685200-100685800	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr11:100685600-100686000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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