Variant report

Variant	rs11224480
Chromosome Location	chr11:100708318-100708319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT1	chr11:100708022-100708764	Hela-S3	cervix:	n/a	chr11:100708352-100708363 chr11:100708373-100708384
2	ZNF384	chr11:100708229-100708469	GM12878	blood:	n/a	n/a
3	STAT3	chr11:100708259-100708517	MCF10A-Er-Src	breast:	n/a	chr11:100708373-100708384 chr11:100708352-100708363
4	STAT3	chr11:100708052-100708546	MCF10A-Er-Src	breast:	n/a	chr11:100708373-100708384 chr11:100708352-100708363
5	STAT3	chr11:100708198-100708537	MCF10A-Er-Src	breast:	n/a	chr11:100708373-100708384 chr11:100708352-100708363

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100702367..100705354-chr11:100707179..100710105,2	K562	blood:

Variant related genes	Relation type
RN7SKP115	TF binding region
ARHGAP42	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11224449	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100698800-100712400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:100699600-100722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:100701600-100717000	Weak transcription	Fetal Kidney	kidney
4	chr11:100703000-100710800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:100703000-100731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:100703800-100712400	Weak transcription	Left Ventricle	heart
7	chr11:100704400-100710200	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:100704600-100719600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:100704800-100710400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:100705200-100711200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:100705200-100711800	Weak transcription	Stomach Mucosa	stomach
12	chr11:100705400-100711800	Weak transcription	A549	lung
13	chr11:100705400-100712000	Weak transcription	Liver	Liver
14	chr11:100705400-100712600	Weak transcription	HSMMtube	muscle
15	chr11:100706600-100709200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:100706800-100709200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:100707200-100708800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:100707200-100709000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr11:100707400-100709000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:100707600-100709000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:100707600-100709200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:100707800-100709000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:100708000-100708400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:100708200-100709000	Enhancers	H9 Cell Line	embryonic stem cell

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