Variant report

Variant	rs11224883
Chromosome Location	chr11:101453635-101453636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:101453602-101454192	H1-neurons	neurons:	n/a	n/a
2	CTBP2	chr11:101453612-101454851	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr11:101453468-101454194	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000254506	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10501985	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs10895146	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs10895147	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11224866	0.81[ASN][1000 genomes]
rs11224869	0.81[ASN][1000 genomes]
rs11224871	0.81[ASN][1000 genomes]
rs11224872	0.81[ASN][1000 genomes]
rs11224876	0.84[ASN][1000 genomes]
rs11224879	0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11493972	0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11606771	0.81[ASN][1000 genomes]
rs12146595	0.84[ASN][1000 genomes]
rs12275413	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs12361061	0.84[ASN][1000 genomes]
rs12366048	0.81[ASN][1000 genomes]
rs12789602	0.88[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs12790768	0.81[ASN][1000 genomes]
rs12797777	0.81[ASN][1000 genomes]
rs3802829	0.84[ASN][1000 genomes]
rs3824935	0.88[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs3922961	0.84[ASN][1000 genomes]
rs4378349	0.81[ASN][1000 genomes]
rs4394815	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs4406798	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs4556510	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs7103450	0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs7109847	0.81[ASN][1000 genomes]
rs7120953	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs7121108	0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs7126833	1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs7129904	0.81[ASN][1000 genomes]
rs7479835	0.81[ASN][1000 genomes]
rs7938938	0.81[ASN][1000 genomes]
rs7951517	0.81[ASN][1000 genomes]
rs7952280	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101452200-101455200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:101452200-101455600	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr11:101452400-101453800	Bivalent/Poised TSS	Fetal Lung	lung
4	chr11:101452400-101453800	Bivalent/Poised TSS	NHDF-Ad	bronchial
5	chr11:101452400-101454800	Active TSS	Right Atrium	heart
6	chr11:101452400-101455200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:101452600-101454600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr11:101452600-101455000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr11:101452800-101454600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
10	chr11:101452800-101454800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr11:101452800-101454800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr11:101452800-101455000	Active TSS	Rectal Smooth Muscle	rectum
13	chr11:101452800-101455200	Active TSS	Ovary	ovary
14	chr11:101452800-101455400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr11:101452800-101455600	Active TSS	Brain Anterior Caudate	brain
16	chr11:101453000-101453800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:101453000-101453800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
18	chr11:101453000-101453800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:101453000-101453800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:101453000-101453800	Bivalent/Poised TSS	Fetal Kidney	kidney
21	chr11:101453000-101453800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
22	chr11:101453000-101453800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
23	chr11:101453000-101454000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:101453000-101454000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
25	chr11:101453000-101454000	Bivalent/Poised TSS	Left Ventricle	heart
26	chr11:101453000-101454000	Bivalent/Poised TSS	Lung	lung
27	chr11:101453000-101454000	Bivalent/Poised TSS	A549	lung
28	chr11:101453000-101454200	Bivalent/Poised TSS	Right Ventricle	heart
29	chr11:101453000-101454400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
30	chr11:101453000-101454400	Bivalent/Poised TSS	Esophagus	oesophagus
31	chr11:101453000-101454400	Bivalent/Poised TSS	NHLF	lung
32	chr11:101453000-101454600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
33	chr11:101453000-101454600	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr11:101453000-101454600	Active TSS	Rectal Mucosa Donor 31	rectum
35	chr11:101453000-101454800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
36	chr11:101453000-101454800	Active TSS	Duodenum Mucosa	Duodenum
37	chr11:101453000-101454800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
38	chr11:101453000-101454800	Bivalent/Poised TSS	Osteobl	bone
39	chr11:101453000-101455000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr11:101453000-101455000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:101453000-101455000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:101453000-101455000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:101453000-101455000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:101453000-101455400	Active TSS	Colon Smooth Muscle	Colon
45	chr11:101453200-101453800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:101453200-101453800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
47	chr11:101453200-101453800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
48	chr11:101453200-101453800	Flanking Bivalent TSS/Enh	Placenta	Placenta
49	chr11:101453200-101454600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:101453200-101454600	Bivalent/Poised TSS	Psoas Muscle	Psoas

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