Variant report

Variant	rs11225144
Chromosome Location	chr11:101996943-101996944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10501995	1.00[MEX][hapmap]
rs11225138	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11225161	1.00[MEX][hapmap]
rs11225166	1.00[MEX][hapmap]
rs11225168	1.00[MEX][hapmap]
rs12222605	0.87[CHB][hapmap]
rs1894116	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101983400-101998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:101983600-101998000	Weak transcription	Right Ventricle	heart
3	chr11:101983600-101998200	Weak transcription	Colonic Mucosa	Colon
4	chr11:101983600-102014800	Weak transcription	Pancreas	Pancrea
5	chr11:101985200-101998000	Weak transcription	Gastric	stomach
6	chr11:101985200-102009200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:101988800-102009000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:101988800-102009600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:101989600-102015200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:101991000-102009000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:101991000-102010000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:101991400-101997200	Weak transcription	Liver	Liver
13	chr11:101991400-101998000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:101991600-102002200	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:101991600-102006000	Weak transcription	NHLF	lung
16	chr11:101991600-102008800	Weak transcription	HSMMtube	muscle
17	chr11:101991600-102012400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:101991600-102015200	Weak transcription	Fetal Kidney	kidney
19	chr11:101991600-102015600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:101991800-102001000	Weak transcription	HSMM	muscle
21	chr11:101991800-102001400	Strong transcription	Fetal Stomach	stomach
22	chr11:101992000-101999600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:101992400-101997600	Weak transcription	Adipose Nuclei	Adipose
24	chr11:101992600-102003600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:101992800-101998800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:101992800-102008800	Weak transcription	NHDF-Ad	bronchial
27	chr11:101993000-101998200	Weak transcription	Ovary	ovary
28	chr11:101993200-101998000	Weak transcription	Psoas Muscle	Psoas
29	chr11:101993200-102000000	Weak transcription	Lung	lung
30	chr11:101993600-101998800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:101993600-102000000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:101993800-101998600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:101993800-101999000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
34	chr11:101994200-101997200	Strong transcription	NHEK	skin
35	chr11:101995000-101997000	Strong transcription	Hela-S3	cervix
36	chr11:101995000-101997400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
37	chr11:101995000-101998000	Strong transcription	Placenta	Placenta
38	chr11:101995000-101998800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:101995200-101997000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:101995200-101999400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr11:101995200-101999800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:101995400-101997600	Strong transcription	A549	lung
43	chr11:101995400-101997600	Strong transcription	HMEC	breast
44	chr11:101995400-101997600	Strong transcription	Osteobl	bone
45	chr11:101995400-101998000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:101995400-101998600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr11:101995400-101998600	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr11:101995400-101999000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:101995400-101999000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:101995400-101999200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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