Variant report

Variant	rs11225263
Chromosome Location	chr11:102342182-102342183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102320576..102325526-chr11:102337005..102343107,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152558	Chromatin interaction
ENSG00000255337	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10750638	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10791571	1.00[ASN][1000 genomes]
rs10791572	0.97[ASN][1000 genomes]
rs11225262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12361597	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2096893	1.00[ASN][1000 genomes]
rs7101948	0.83[ASN][1000 genomes]
rs7102823	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7102957	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv469990	chr11:102335609-102413943	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv556150	chr11:102335609-102415859	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv468854	chr11:102336617-102413943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv556151	chr11:102336617-102413943	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102324600-102344600	Weak transcription	Colonic Mucosa	Colon
2	chr11:102334800-102345600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr11:102335000-102343200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr11:102335000-102343200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr11:102335000-102343600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr11:102335200-102343400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:102335400-102342400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:102337000-102343000	Enhancers	Placenta	Placenta
9	chr11:102337400-102342400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:102337400-102342600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:102337600-102342800	Enhancers	HMEC	breast
12	chr11:102338000-102347000	Weak transcription	Small Intestine	intestine
13	chr11:102339000-102345800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr11:102339000-102347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:102339200-102345600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr11:102339600-102344000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:102339800-102344000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:102339800-102344000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:102339800-102344000	Weak transcription	Stomach Mucosa	stomach
20	chr11:102339800-102347000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:102340000-102342200	Weak transcription	Liver	Liver
22	chr11:102340000-102342400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:102340000-102342400	Enhancers	Fetal Thymus	thymus
24	chr11:102340000-102344200	Weak transcription	K562	blood
25	chr11:102340000-102344400	Weak transcription	Fetal Lung	lung
26	chr11:102340200-102342400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr11:102340200-102342800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:102340600-102342200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr11:102340600-102342800	Enhancers	Rectal Smooth Muscle	rectum
30	chr11:102340600-102342800	Weak transcription	Hela-S3	cervix
31	chr11:102340600-102343800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:102340600-102346800	Weak transcription	A549	lung
33	chr11:102340800-102345600	Weak transcription	Spleen	Spleen
34	chr11:102340800-102347000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:102340800-102347200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:102340800-102347600	Weak transcription	Lung	lung
37	chr11:102341000-102342400	Weak transcription	HepG2	liver
38	chr11:102341000-102343800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:102341000-102343800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:102341000-102344400	Weak transcription	Gastric	stomach
41	chr11:102341000-102346800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:102341000-102347400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:102341000-102359600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:102341200-102345400	Enhancers	Primary T cells from cord blood	blood
45	chr11:102341400-102344200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr11:102341400-102345600	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr11:102341600-102344400	Weak transcription	Primary B cells from cord blood	blood
48	chr11:102341800-102342200	Enhancers	HSMMtube	muscle
49	chr11:102341800-102342400	Enhancers	NHEK	skin
50	chr11:102341800-102344200	Weak transcription	GM12878-XiMat	blood

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