Variant report

Variant	rs11225341
Chromosome Location	chr11:102475936-102475937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:102475599-102476022	H1-hESC	embryonic stem cell:	n/a	chr11:102475803-102475814
2	YY1	chr11:102475789-102476072	HCT-116	colon:	n/a	chr11:102475923-102475935
3	ATF2	chr11:102475660-102476019	H1-hESC	embryonic stem cell:	n/a	n/a
4	YY1	chr11:102475698-102476090	H1-hESC	embryonic stem cell:	n/a	chr11:102475923-102475935
5	TEAD4	chr11:102475646-102475951	H1-hESC	embryonic stem cell:	n/a	n/a
6	YY1	chr11:102475724-102476104	H1-hESC	embryonic stem cell:	n/a	chr11:102475923-102475935
7	JUND	chr11:102475669-102475954	K562	blood:	n/a	chr11:102475803-102475814

Variant related genes	Relation type
ENSG00000256916	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11225340	1.00[AMR][1000 genomes]
rs11225342	1.00[AMR][1000 genomes]
rs11825664	1.00[AMR][1000 genomes]
rs12283645	1.00[AMR][1000 genomes]
rs12289419	1.00[AMR][1000 genomes]
rs17098686	1.00[AMR][1000 genomes]
rs7125086	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102469200-102476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:102470000-102476000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:102470800-102476000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:102471000-102476200	Enhancers	HMEC	breast
5	chr11:102473200-102476600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:102473800-102476000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:102473800-102476000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:102473800-102476200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:102474000-102476000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:102474600-102476000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:102474600-102476000	Enhancers	HSMM	muscle
12	chr11:102474600-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:102474800-102476000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:102474800-102476200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:102475200-102476000	Enhancers	NHEK	skin
16	chr11:102475200-102486200	Weak transcription	HSMMtube	muscle
17	chr11:102475400-102483600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:102475600-102476000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:102475600-102476000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:102475600-102476000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:102475800-102476000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:102475800-102476000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr11:102475800-102476000	Enhancers	Placenta	Placenta
24	chr11:102475800-102476200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:102475800-102478800	Weak transcription	A549	lung
26	chr11:102475800-102484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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