Variant report

Variant	rs112255675
Chromosome Location	chr3:155488062-155488063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155481429..155485286-chr3:155486373..155491702,5	K562	blood:
2	chr3:155480147..155483683-chr3:155487368..155490043,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv592079	chr3:155474879-155493915	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1009635	chr3:155475438-155515484	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010726	chr3:155476547-155492177	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1007915	chr3:155476547-155513397	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv592080	chr3:155479222-155511844	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv14416	chr3:155479247-155512774	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv514997	chr3:155481066-155491738	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv441844	chr3:155481096-155492177	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv2763741	chr3:155481097-155492177	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1004723	chr3:155481097-155492177	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv592081	chr3:155481097-155493915	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv592082	chr3:155481097-155500859	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv1006439	chr3:155481097-155515484	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv1014031	chr3:155481097-155524777	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
18	esv33346	chr3:155481220-155498441	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	esv3693343	chr3:155481609-155493915	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv516712	chr3:155481609-155493915	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv818180	chr3:155481609-155493915	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv592083	chr3:155484125-155498311	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv963538	chr3:155484316-155497006	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	esv2757018	chr3:155485302-155491007	Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv2759192	chr3:155485302-155491007	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv1001756	chr3:155487190-155515484	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
27	esv2753296	chr3:155487298-155491298	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155463800-155501200	Weak transcription	Aorta	Aorta
2	chr3:155464200-155489600	Weak transcription	Brain Anterior Caudate	brain
3	chr3:155464200-155490600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:155467200-155500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:155467200-155508000	Weak transcription	K562	blood
6	chr3:155467200-155508800	Weak transcription	Hela-S3	cervix
7	chr3:155467400-155508400	Weak transcription	HepG2	liver
8	chr3:155471400-155509000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:155472800-155500000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:155474200-155490600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:155474200-155497600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:155474400-155492000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr3:155474800-155489000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr3:155475200-155491000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:155475200-155492200	Weak transcription	Fetal Kidney	kidney
16	chr3:155476600-155500000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:155478600-155509000	Weak transcription	Gastric	stomach
18	chr3:155478800-155492600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:155479000-155492000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr3:155479200-155490600	Weak transcription	Fetal Lung	lung
21	chr3:155480200-155509200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:155480400-155500200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:155480600-155503800	Weak transcription	HUVEC	blood vessel
24	chr3:155481800-155499800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr3:155482000-155495800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:155484400-155494200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:155487000-155510600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:155487000-155511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:155487200-155489200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:155487400-155488200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:155487400-155488200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
32	chr3:155487400-155488200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:155487400-155488200	ZNF genes & repeats	Brain Germinal Matrix	brain
34	chr3:155487400-155488200	Strong transcription	Left Ventricle	heart
35	chr3:155487400-155488400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:155487400-155488400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:155487400-155488800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
38	chr3:155487400-155488800	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr3:155487400-155489000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:155487400-155489000	ZNF genes & repeats	Thymus	Thymus
41	chr3:155487400-155489000	ZNF genes & repeats	Dnd41	blood
42	chr3:155487400-155489200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
43	chr3:155487400-155489200	ZNF genes & repeats	Liver	Liver
44	chr3:155487400-155489400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:155487400-155489400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
46	chr3:155487600-155488200	Enhancers	H1 Cell Line	embryonic stem cell
47	chr3:155487600-155488200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr3:155487600-155488200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr3:155487600-155488200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:155487600-155488200	Strong transcription	Brain Angular Gyrus	brain

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