Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44326030..44327611-chr6:44332225..44334880,2	MCF-7	breast:
2	chr6:44327128..44330014-chr6:44331839..44333459,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10948132	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs10948134	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs1411903	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1411904	0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs1909887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2065361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4714782	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs4714784	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs4714785	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs6935417	0.84[AFR][1000 genomes]
rs6935721	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7738562	0.89[AFR][1000 genomes]
rs7760813	0.87[AFR][1000 genomes]
rs7769100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7769128	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9381315	0.90[AFR][1000 genomes]
rs9462982	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9462983	0.82[EUR][1000 genomes]
rs9472261	0.80[EUR][1000 genomes]
rs9472263	0.89[AFR][1000 genomes]
rs950230	0.89[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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