Variant report

Variant	rs11227334
Chromosome Location	chr11:65661118-65661119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65190823..65192325-chr11:65659028..65661799,2	K562	blood:
2	chr11:65465574..65468849-chr11:65659509..65661845,3	K562	blood:
3	chr11:65650800..65661192-chr11:65726307..65736419,31	MCF-7	breast:
4	chr11:65650579..65663306-chr11:65677153..65690311,39	MCF-7	breast:
5	chr11:65473150..65475653-chr11:65659973..65662538,2	K562	blood:
6	chr11:65574802..65576504-chr11:65658689..65661475,2	K562	blood:
7	chr11:65654924..65661575-chr11:65833688..65838665,10	K562	blood:
8	chr11:65472457..65475716-chr11:65659486..65662901,4	K562	blood:
9	chr11:65477188..65481209-chr11:65654091..65661409,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255038	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000175573	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000175467	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11227305	0.86[ASN][1000 genomes]
rs11227319	0.89[ASN][1000 genomes]
rs11227320	0.89[ASN][1000 genomes]
rs11227325	0.86[ASN][1000 genomes]
rs11227326	0.89[ASN][1000 genomes]
rs11227330	0.89[ASN][1000 genomes]
rs11227331	0.89[ASN][1000 genomes]
rs11227335	1.00[ASN][1000 genomes]
rs12223734	0.93[ASN][1000 genomes]
rs12226602	0.88[ASN][1000 genomes]
rs2234457	1.00[AMR][1000 genomes]
rs2234460	1.00[AMR][1000 genomes]
rs2234461	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
12	nsv530622	chr11:65649068-65661361	Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65655000-65662200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:65656200-65662200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr11:65657800-65661200	Active TSS	Psoas Muscle	Psoas
4	chr11:65658200-65662000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:65658600-65662000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr11:65658600-65662200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:65658800-65662000	Transcr. at gene 5' and 3'	NHLF	lung
8	chr11:65659000-65662200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
9	chr11:65659000-65662200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:65659000-65662200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:65659200-65661400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:65659200-65661800	Flanking Active TSS	Brain Cingulate Gyrus	brain
13	chr11:65659200-65662200	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
14	chr11:65659400-65661200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:65659400-65661200	Enhancers	Liver	Liver
16	chr11:65659400-65661400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:65659400-65662000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:65659600-65661200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:65659600-65661200	Weak transcription	Esophagus	oesophagus
20	chr11:65659600-65661200	Enhancers	Small Intestine	intestine
21	chr11:65659600-65661600	Enhancers	Fetal Lung	lung
22	chr11:65659600-65661800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:65659600-65662000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:65659600-65662000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr11:65659600-65662000	Enhancers	Spleen	Spleen
26	chr11:65659800-65661200	Enhancers	Colon Smooth Muscle	Colon
27	chr11:65659800-65661600	Enhancers	Fetal Heart	heart
28	chr11:65659800-65661800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr11:65659800-65661800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:65659800-65661800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:65659800-65661800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:65659800-65662000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:65659800-65662000	Enhancers	Placenta	Placenta
34	chr11:65659800-65665800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:65659800-65665800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:65660000-65661200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:65660000-65661200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:65660000-65661200	Weak transcription	Fetal Intestine Large	intestine
39	chr11:65660000-65661200	Enhancers	Fetal Muscle Trunk	muscle
40	chr11:65660000-65661400	Enhancers	Brain Germinal Matrix	brain
41	chr11:65660000-65661600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr11:65660000-65662000	Enhancers	Left Ventricle	heart
43	chr11:65660000-65662000	Genic enhancers	NH-A	brain
44	chr11:65660200-65661200	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr11:65660200-65661400	Enhancers	Fetal Stomach	stomach
46	chr11:65660200-65662000	Genic enhancers	A549	lung
47	chr11:65660200-65662200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:65660200-65662200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:65660200-65662800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:65660200-65665800	Genic enhancers	K562	blood

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