Variant report

Variant	rs11227358
Chromosome Location	chr11:65713432-65713433
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65686026..65690385-chr11:65711034..65716101,7	MCF-7	breast:
2	chr11:65625517..65628088-chr11:65710841..65713644,2	MCF-7	breast:
3	chr11:65713309..65715025-chr11:65726404..65729230,2	MCF-7	breast:
4	chr11:65655539..65656195-chr11:65713426..65714221,2	K562	blood:

Variant related genes	Relation type
ENSG00000172757	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000175573	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000172500	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10896069	0.91[ASN][1000 genomes]
rs11227352	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11227357	1.00[ASN][1000 genomes]
rs11227361	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11227363	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11227369	0.94[ASN][1000 genomes]
rs11227394	0.82[JPT][hapmap]
rs1151513	0.80[ASN][1000 genomes]
rs1211380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12223658	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12286846	0.91[ASN][1000 genomes]
rs1892901	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2096903	0.91[ASN][1000 genomes]
rs2847698	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3814747	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs3814748	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4930165	0.88[ASN][1000 genomes]
rs4930327	0.89[ASN][1000 genomes]
rs4930329	0.83[ASN][1000 genomes]
rs4930331	0.91[ASN][1000 genomes]
rs7103709	0.84[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7125150	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs744478	0.85[JPT][hapmap]
rs7937692	0.82[JPT][hapmap]
rs9666934	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
6	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
7	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
8	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
9	esv3444925	chr11:65687425-65714023	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65688800-65715000	Weak transcription	Right Atrium	heart
2	chr11:65709200-65726000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:65709400-65717800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:65712400-65716400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:65712600-65713800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:65712800-65713600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:65712800-65713600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:65712800-65713800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:65712800-65713800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:65712800-65713800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:65712800-65713800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr11:65712800-65713800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr11:65712800-65713800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:65712800-65713800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr11:65712800-65713800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr11:65712800-65715400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:65713000-65713600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr11:65713000-65713800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:65713000-65713800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:65713200-65713600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:65713200-65713800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
22	chr11:65713200-65713800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr11:65713200-65715400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr11:65713400-65713800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
25	chr11:65713400-65713800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:65713400-65714400	Bivalent Enhancer	HepG2	liver
27	chr11:65713400-65715400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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