Variant report

Variant	rs11227733
Chromosome Location	chr11:66975394-66975395
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11227785	1.00[AFR][1000 genomes]
rs12363897	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
2	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
3	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
7	chr11:66953400-66982800	Weak transcription	Aorta	Aorta
8	chr11:66953400-66982800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:66953800-66978400	Weak transcription	K562	blood
10	chr11:66953800-66982800	Weak transcription	HUVEC	blood vessel
11	chr11:66954000-66976000	Weak transcription	Brain Substantia Nigra	brain
12	chr11:66954000-66979400	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:66954600-66993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:66956400-67005000	Weak transcription	Fetal Heart	heart
16	chr11:66962200-66999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:66962400-66982800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:66962600-66995000	Weak transcription	Psoas Muscle	Psoas
19	chr11:66962800-66977400	Weak transcription	Esophagus	oesophagus
20	chr11:66963800-66978400	Weak transcription	HSMMtube	muscle
21	chr11:66963800-66980400	Weak transcription	A549	lung
22	chr11:66964000-66982800	Weak transcription	NHEK	skin
23	chr11:66964400-66989400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:66964600-67002400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:66965200-66978200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:66965200-67006400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:66965400-66982800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:66966400-66989400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:66967800-66977600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:66968200-66982800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:66968400-66977600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:66968400-66977800	Weak transcription	HMEC	breast
33	chr11:66969800-66977400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:66970400-66979200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:66970400-66988800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:66970800-66977200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:66971400-66989200	Strong transcription	Placenta	Placenta
38	chr11:66971600-66976000	Strong transcription	Osteobl	bone
39	chr11:66972000-66978200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr11:66972400-66978600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:66972400-66989600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr11:66972600-66980600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:66972600-66987800	Strong transcription	Fetal Stomach	stomach
44	chr11:66972600-66989000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:66972800-66978000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:66972800-66981800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:66972800-66987600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:66972800-66988400	Strong transcription	Fetal Intestine Large	intestine
49	chr11:66972800-67002600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr11:66973000-66976200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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