Variant report

Variant	rs112280338
Chromosome Location	chr6:34455893-34455894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34450444..34452541-chr6:34453847..34456328,2	K562	blood:
2	chr6:34454834..34457480-chr6:34459014..34462062,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv462904	chr6:34416388-34493012	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv602903	chr6:34416388-34493012	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv885786	chr6:34426884-34542662	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
9	esv1813536	chr6:34455242-34545123	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34441400-34494000	Weak transcription	Right Atrium	heart
2	chr6:34444600-34468200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:34451000-34458800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:34453200-34458400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:34453200-34458400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:34453400-34458200	Weak transcription	K562	blood
7	chr6:34454400-34456000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:34454400-34458200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:34454400-34458400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:34454400-34459000	Weak transcription	NHEK	skin
11	chr6:34454400-34461000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:34454400-34464800	Weak transcription	Thymus	Thymus
13	chr6:34455000-34458400	Weak transcription	Fetal Thymus	thymus
14	chr6:34455200-34459800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:34455400-34456200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:34455800-34456000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:34455800-34456000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:34455800-34456000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:34455800-34456000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:34455800-34456400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:34455800-34456400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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