Variant report

Variant	rs112292367
Chromosome Location	chr6:142509145-142509146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886732	chr6:142290338-142536049	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv886733	chr6:142316672-142514226	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv886734	chr6:142347611-142523865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv830824	chr6:142361107-142544929	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv886736	chr6:142365171-142523865	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	esv3367413	chr6:142508990-142509410	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
7	esv2574651	chr6:142509002-142510396	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142484200-142533800	Weak transcription	Aorta	Aorta
2	chr6:142484600-142510000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:142489000-142543200	Weak transcription	Small Intestine	intestine
4	chr6:142492200-142524800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:142495400-142517000	Weak transcription	NHEK	skin
6	chr6:142495600-142510400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:142495600-142513000	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:142495600-142533600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:142495800-142519600	Weak transcription	HMEC	breast
10	chr6:142496000-142525000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:142496000-142528600	Weak transcription	Lung	lung
12	chr6:142496200-142510400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:142496200-142513200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:142496200-142514800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:142496200-142519400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:142496200-142519600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:142496200-142527600	Weak transcription	Thymus	Thymus
18	chr6:142496200-142528200	Weak transcription	Fetal Stomach	stomach
19	chr6:142496200-142528400	Weak transcription	Brain Germinal Matrix	brain
20	chr6:142496200-142533800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:142496200-142533800	Weak transcription	Gastric	stomach
22	chr6:142496200-142533800	Weak transcription	Pancreas	Pancrea
23	chr6:142496400-142517200	Weak transcription	Osteobl	bone
24	chr6:142496400-142528000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:142496400-142533600	Weak transcription	Colonic Mucosa	Colon
26	chr6:142496600-142519600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:142496600-142525800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:142496600-142526200	Weak transcription	Esophagus	oesophagus
29	chr6:142496600-142533800	Weak transcription	Left Ventricle	heart
30	chr6:142496600-142546800	Weak transcription	NHLF	lung
31	chr6:142498200-142526000	Weak transcription	Fetal Intestine Small	intestine
32	chr6:142498400-142510200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:142498600-142510000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:142498600-142519600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:142498600-142527800	Weak transcription	Ovary	ovary
36	chr6:142499000-142510400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:142499200-142510600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:142499200-142524800	Weak transcription	HSMMtube	muscle
39	chr6:142499400-142510200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:142499400-142510200	Weak transcription	HepG2	liver
41	chr6:142499400-142511600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr6:142499400-142514800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:142499400-142514800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:142499400-142514800	Weak transcription	Psoas Muscle	Psoas
45	chr6:142499400-142515800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr6:142499400-142519600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:142499600-142509800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr6:142499600-142510200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:142499600-142510600	Weak transcription	Adipose Nuclei	Adipose
50	chr6:142499600-142513800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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