Variant report

Variant	rs11229536
Chromosome Location	chr11:58349095-58349096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58347130..58349444-chr11:58352908..58354763,3	MCF-7	breast:
2	chr11:58346682..58349272-chr11:58349301..58352571,4	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12270390	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58344400-58349200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:58344400-58349400	Active TSS	K562	blood
3	chr11:58344600-58350000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:58345200-58349200	Active TSS	Hela-S3	cervix
5	chr11:58346400-58349200	Active TSS	Right Atrium	heart
6	chr11:58347600-58349800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr11:58347600-58360200	Weak transcription	Esophagus	oesophagus
8	chr11:58347600-58361400	Weak transcription	Gastric	stomach
9	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
10	chr11:58347600-58379800	Weak transcription	Lung	lung
11	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:58347800-58377200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
14	chr11:58348000-58349200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:58348000-58349400	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
16	chr11:58348000-58351000	Enhancers	Adipose Nuclei	Adipose
17	chr11:58348200-58349200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:58348200-58349200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:58348200-58349200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr11:58348200-58349200	Enhancers	Colonic Mucosa	Colon
21	chr11:58348200-58349400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:58348200-58349600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:58348200-58352800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:58348200-58377400	Weak transcription	Fetal Kidney	kidney
25	chr11:58348400-58349600	Enhancers	Fetal Heart	heart
26	chr11:58348400-58350200	Genic enhancers	Primary B cells from cord blood	blood
27	chr11:58348400-58350200	Transcr. at gene 5' and 3'	Dnd41	blood
28	chr11:58348400-58350800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:58348400-58351800	Enhancers	Colon Smooth Muscle	Colon
30	chr11:58348400-58352000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:58348400-58352200	Enhancers	Liver	Liver
32	chr11:58348600-58349200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:58348600-58349200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:58348600-58349200	Enhancers	Brain Germinal Matrix	brain
35	chr11:58348600-58349200	Enhancers	Psoas Muscle	Psoas
36	chr11:58348600-58349200	Weak transcription	A549	lung
37	chr11:58348600-58349200	Enhancers	HSMMtube	muscle
38	chr11:58348600-58349200	Weak transcription	NH-A	brain
39	chr11:58348600-58349400	Genic enhancers	Fetal Intestine Small	intestine
40	chr11:58348600-58349400	Weak transcription	Fetal Lung	lung
41	chr11:58348600-58349400	Enhancers	HepG2	liver
42	chr11:58348600-58349400	Weak transcription	HSMM	muscle
43	chr11:58348600-58349600	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr11:58348600-58349600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:58348600-58349600	Enhancers	Brain Anterior Caudate	brain
46	chr11:58348600-58349600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:58348600-58349600	Enhancers	Brain Substantia Nigra	brain
48	chr11:58348600-58349600	Enhancers	Fetal Intestine Large	intestine
49	chr11:58348600-58349800	Enhancers	Primary hematopoietic stem cells	blood
50	chr11:58348600-58349800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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