Variant report

Variant	rs112296704
Chromosome Location	chr5:49406041-49406042
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334856	chr5:49405642-49442693	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
2	esv3353509	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3365495	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
4	esv3403552	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3451841	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
6	esv997367	chr5:49405763-49441191	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv17894	chr5:49405763-49442098	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
8	esv19415	chr5:49405763-49485157	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv820439	chr5:49405763-49552643	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv15107	chr5:49405763-49562327	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv6051	chr5:49405841-49436199	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:49405600-49406200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr5:49405600-49406200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:49405600-49406200	ZNF genes & repeats	Small Intestine	intestine
4	chr5:49405800-49406200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:49405800-49406200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr5:49406000-49406400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:49406000-49406600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:49406000-49406600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:49406000-49406600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:49406000-49406600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:49406000-49406800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:49406000-49407400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:49406000-49409400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr5:49406000-49409600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:49406000-49409600	Weak transcription	Fetal Heart	heart
16	chr5:49406000-49409600	Weak transcription	Left Ventricle	heart
17	chr5:49406000-49409600	Weak transcription	Right Ventricle	heart
18	chr5:49406000-49409600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:49406000-49410600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:49406000-49413800	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:49406000-49413800	Weak transcription	Stomach Mucosa	stomach
22	chr5:49406000-49414200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:49406000-49414200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:49406000-49414200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr5:49406000-49414200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr5:49406000-49414200	Weak transcription	Aorta	Aorta
27	chr5:49406000-49414200	Weak transcription	Brain Angular Gyrus	brain
28	chr5:49406000-49414200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:49406000-49414200	Weak transcription	Brain Substantia Nigra	brain
30	chr5:49406000-49414200	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:49406000-49414200	Weak transcription	Pancreas	Pancrea
32	chr5:49406000-49414200	Weak transcription	Psoas Muscle	Psoas
33	chr5:49406000-49414200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr5:49406000-49414200	Weak transcription	Thymus	Thymus
35	chr5:49406000-49414200	Weak transcription	Dnd41	blood
36	chr5:49406000-49414200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr5:49406000-49414200	Weak transcription	NH-A	brain
38	chr5:49406000-49414400	Weak transcription	HSMMtube	muscle

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