Variant report

Variant	rs11229906
Chromosome Location	chr11:59036073-59036074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12290913	1.00[AMR][1000 genomes]
rs7112020	1.00[AMR][1000 genomes]
rs7126937	1.00[AMR][1000 genomes]
rs7941622	1.00[AMR][1000 genomes]
rs9988847	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3381199	chr11:59015574-59068938	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59029800-59039000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr11:59029800-59040400	Enhancers	Primary B cells from cord blood	blood
3	chr11:59031400-59039000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:59031800-59036800	Enhancers	Placenta	Placenta
5	chr11:59032000-59036200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:59032200-59036200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:59032600-59039200	Weak transcription	Spleen	Spleen
8	chr11:59034000-59036600	Enhancers	GM12878-XiMat	blood
9	chr11:59034200-59040400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:59034400-59036800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:59035000-59038800	Weak transcription	Liver	Liver
12	chr11:59035000-59040600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr11:59035400-59037000	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr11:59035800-59036200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:59035800-59039400	Weak transcription	Stomach Mucosa	stomach
16	chr11:59036000-59037200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:59036000-59037400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr11:59036000-59038200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:59036000-59038400	Weak transcription	HMEC	breast
20	chr11:59036000-59039000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:59036000-59039000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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