Variant report

Variant	rs11230000
Chromosome Location	chr11:59334952-59334953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:59334891-59335135	K562	blood:	n/a	n/a
2	CEBPB	chr11:59334866-59335133	K562	blood:	n/a	n/a
3	POLR2A	chr11:59334444-59335173	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59332034..59337600-chr11:59380778..59383923,5	K562	blood:
2	chr11:59331158..59335239-chr11:59432687..59436578,5	K562	blood:

Variant related genes	Relation type
ENSG00000255008	TF binding region
ENSG00000110048	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255139	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11603417	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11606058	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12574490	0.80[CHB][hapmap];0.92[JPT][hapmap]
rs3758872	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59333800-59338600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:59333800-59339800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:59333800-59340600	Weak transcription	HMEC	breast
4	chr11:59333800-59341000	Weak transcription	Liver	Liver
5	chr11:59333800-59341600	Weak transcription	Lung	lung
6	chr11:59333800-59342200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:59333800-59342200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:59333800-59342200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:59333800-59342400	Weak transcription	Gastric	stomach
10	chr11:59333800-59342400	Weak transcription	Pancreas	Pancrea
11	chr11:59333800-59342400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:59333800-59342400	Weak transcription	Small Intestine	intestine
13	chr11:59333800-59342600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:59333800-59342600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:59333800-59343000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:59333800-59343000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:59333800-59343000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:59333800-59343000	Weak transcription	Fetal Brain Male	brain
19	chr11:59333800-59343000	Weak transcription	Spleen	Spleen
20	chr11:59333800-59343200	Weak transcription	Aorta	Aorta
21	chr11:59333800-59343200	Weak transcription	Brain Angular Gyrus	brain
22	chr11:59333800-59343200	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:59333800-59343200	Weak transcription	Esophagus	oesophagus
24	chr11:59333800-59343400	Weak transcription	Brain Substantia Nigra	brain
25	chr11:59333800-59343400	Weak transcription	Colonic Mucosa	Colon
26	chr11:59333800-59343400	Weak transcription	Stomach Mucosa	stomach
27	chr11:59333800-59344400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:59333800-59351800	Weak transcription	Fetal Heart	heart
29	chr11:59334000-59335600	Weak transcription	Placenta	Placenta
30	chr11:59334000-59340000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:59334000-59340600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:59334000-59340800	Weak transcription	Brain Germinal Matrix	brain
33	chr11:59334000-59340800	Weak transcription	Fetal Thymus	thymus
34	chr11:59334000-59341000	Weak transcription	Primary T cells from cord blood	blood
35	chr11:59334000-59341000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:59334000-59341000	Weak transcription	Fetal Intestine Small	intestine
37	chr11:59334000-59341000	Weak transcription	Fetal Stomach	stomach
38	chr11:59334000-59341400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:59334000-59341600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:59334000-59341600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr11:59334000-59342000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr11:59334000-59342000	Weak transcription	Primary B cells from cord blood	blood
43	chr11:59334000-59342200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:59334000-59342200	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:59334000-59342200	Weak transcription	Left Ventricle	heart
46	chr11:59334000-59342400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr11:59334000-59342400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:59334000-59342400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:59334000-59342400	Weak transcription	Fetal Lung	lung
50	chr11:59334000-59342400	Weak transcription	Stomach Smooth Muscle	stomach

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