Variant report

Variant	rs112310387
Chromosome Location	chr4:103650567-103650568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:103650566-103650618	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103649437..103652154-chr4:103748194..103749901,2	K562	blood:

Variant related genes	Relation type
ENSG00000224207	TF binding region
ENSG00000246560	Chromatin interaction
ENSG00000109332	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008110	chr4:103560583-103684526	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv966303	chr4:103649229-103653443	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103547000-103658200	Weak transcription	Small Intestine	intestine
2	chr4:103553000-103651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:103553400-103651400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:103571800-103655800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:103581800-103681000	Weak transcription	Spleen	Spleen
6	chr4:103609600-103664800	Weak transcription	Esophagus	oesophagus
7	chr4:103618400-103655800	Weak transcription	HSMM	muscle
8	chr4:103627400-103651000	Weak transcription	Right Ventricle	heart
9	chr4:103627400-103655400	Weak transcription	Lung	lung
10	chr4:103627600-103652400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr4:103630400-103655800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:103632400-103666200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:103632400-103667600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:103632800-103651000	Weak transcription	Fetal Brain Female	brain
15	chr4:103634400-103655400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:103634600-103653400	Weak transcription	Fetal Lung	lung
17	chr4:103634600-103655400	Weak transcription	NHDF-Ad	bronchial
18	chr4:103634600-103655600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:103634600-103655600	Weak transcription	NHLF	lung
20	chr4:103634800-103655800	Weak transcription	Osteobl	bone
21	chr4:103636000-103652400	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:103636200-103651000	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:103636600-103651000	Weak transcription	Left Ventricle	heart
24	chr4:103637000-103680800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:103638000-103651000	Strong transcription	Primary B cells from cord blood	blood
26	chr4:103638800-103681000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:103639000-103651200	Weak transcription	Placenta	Placenta
28	chr4:103639000-103651400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:103639000-103656000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr4:103639200-103659400	Weak transcription	Ovary	ovary
31	chr4:103639600-103655800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:103641000-103651400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:103641000-103671600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr4:103641200-103651000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:103641200-103651400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr4:103641200-103651400	Weak transcription	K562	blood
37	chr4:103641200-103652800	Weak transcription	Adipose Nuclei	Adipose
38	chr4:103641200-103653600	Weak transcription	HSMMtube	muscle
39	chr4:103641200-103656200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr4:103641200-103680800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:103641400-103657800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr4:103641400-103659400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr4:103644400-103655400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr4:103644600-103650600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:103644600-103651200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr4:103644600-103652200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr4:103644600-103658200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr4:103644800-103651400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:103644800-103655600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:103644800-103658000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links