Variant report

Variant	rs11231121
Chromosome Location	chr11:62269774-62269775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:62264769..62270336-chr11:62318540..62328182,11	MCF-7	breast:
2	chr11:62266117..62267869-chr11:62269229..62271968,2	K562	blood:
3	chr11:62266237..62270077-chr11:62311081..62316115,10	MCF-7	breast:
4	chr11:62269079..62270665-chr11:62376231..62379214,2	K562	blood:
5	chr11:62161092..62163982-chr11:62266671..62270738,3	MCF-7	breast:
6	chr11:62262841..62270580-chr11:62309307..62316157,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149499	Chromatin interaction
ENSG00000124942	Chromatin interaction
ENSG00000149489	Chromatin interaction
ENSG00000257058	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10897285	1.00[ASN][1000 genomes]
rs11231108	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11231109	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11231110	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11231111	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11231112	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11231115	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11231116	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11231117	1.00[ASN][1000 genomes]
rs11231119	1.00[ASN][1000 genomes]
rs11231120	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11231128	0.81[EUR][1000 genomes]
rs11231130	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes]
rs11819950	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11822224	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11826756	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11827029	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12223424	1.00[ASN][1000 genomes]
rs12271287	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12273682	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12273757	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12273761	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12281588	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes]
rs12281651	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12289932	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12291022	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12291805	0.81[EUR][1000 genomes]
rs12292433	0.81[EUR][1000 genomes]
rs12294680	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17157332	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17157338	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17157363	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157365	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35117866	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3867144	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4124	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56234858	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56973213	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57973105	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59295893	1.00[ASN][1000 genomes]
rs61312994	0.81[EUR][1000 genomes]
rs61625484	0.81[EUR][1000 genomes]
rs7105793	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108380	0.85[EUR][1000 genomes]
rs7123692	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes]
rs7124044	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7124130	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7127582	0.90[EUR][1000 genomes]
rs73500219	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7929818	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7937521	0.85[EUR][1000 genomes]
rs7946258	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7951639	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915636	chr11:62016992-62713565	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1441 gene(s)	inside rSNPs	diseases
2	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
3	nsv832180	chr11:62201605-62364828	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv532284	chr11:62220043-62630253	Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1401 gene(s)	inside rSNPs	diseases
5	nsv345	chr11:62225251-62270254	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv897621	chr11:62230309-62290170	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3584599	chr11:62262742-62398050	Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62247800-62272600	Weak transcription	Aorta	Aorta
2	chr11:62263400-62271800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:62265000-62271800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:62265400-62272400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:62265800-62270200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:62266200-62271800	Weak transcription	Fetal Intestine Large	intestine
7	chr11:62266400-62272800	Enhancers	Placenta	Placenta
8	chr11:62266600-62270600	Enhancers	Fetal Muscle Leg	muscle
9	chr11:62266600-62271000	Enhancers	Left Ventricle	heart
10	chr11:62266800-62269800	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:62266800-62270200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr11:62266800-62270800	Enhancers	Psoas Muscle	Psoas
13	chr11:62266800-62270800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:62266800-62271200	Enhancers	Adipose Nuclei	Adipose
15	chr11:62266800-62271400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:62267000-62269800	Enhancers	Right Ventricle	heart
17	chr11:62267000-62269800	Enhancers	NHDF-Ad	bronchial
18	chr11:62267000-62270000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:62267000-62270200	Enhancers	Fetal Stomach	stomach
20	chr11:62267000-62270600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:62267000-62271000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:62267000-62277400	Enhancers	Fetal Heart	heart
23	chr11:62267200-62269800	Enhancers	Rectal Smooth Muscle	rectum
24	chr11:62267200-62270400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:62267200-62270600	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:62267200-62271000	Enhancers	A549	lung
27	chr11:62267400-62270400	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr11:62267600-62275600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:62267800-62272600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr11:62267800-62272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:62268000-62270000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr11:62268000-62274600	Weak transcription	Hela-S3	cervix
33	chr11:62268200-62270200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr11:62268200-62271800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:62268400-62272600	Weak transcription	Osteobl	bone
36	chr11:62268600-62270200	Enhancers	Esophagus	oesophagus
37	chr11:62268600-62270400	Enhancers	Lung	lung
38	chr11:62268600-62270600	Enhancers	Brain Substantia Nigra	brain
39	chr11:62268600-62270800	Enhancers	Liver	Liver
40	chr11:62268600-62272600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:62268600-62272800	Weak transcription	NHEK	skin
42	chr11:62268800-62269800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:62268800-62270400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:62268800-62270400	Enhancers	Right Atrium	heart
45	chr11:62269000-62269800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:62269000-62270200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:62269000-62270400	Enhancers	Fetal Lung	lung
48	chr11:62269000-62270800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:62269000-62270800	Enhancers	Duodenum Mucosa	Duodenum
50	chr11:62269000-62270800	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links