Variant report

Variant	rs11231139
Chromosome Location	chr11:62321906-62321907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:62321393..62323632-chr11:62473132..62475365,2	MCF-7	breast:
2	chr11:62320231..62322469-chr11:62326560..62328980,3	MCF-7	breast:
3	chr11:62193785..62196045-chr11:62320094..62322958,2	MCF-7	breast:
4	chr11:62185139..62188235-chr11:62320185..62324044,3	MCF-7	breast:
5	chr11:62321865..62325242-chr11:62431318..62434268,4	K562	blood:
6	chr11:62160348..62163997-chr11:62321083..62323694,4	MCF-7	breast:
7	chr11:62146741..62149707-chr11:62320013..62321966,2	K562	blood:
8	chr11:62321257..62322032-chr16:2802980..2803700,2	Hela-S3	cervix:
9	chr11:62190284..62193281-chr11:62319104..62322471,3	K562	blood:
10	chr11:62200012..62201621-chr11:62321481..62323335,2	K562	blood:
11	chr11:62319630..62322265-chr11:62553622..62556527,2	MCF-7	breast:
12	chr11:62159336..62161746-chr11:62320649..62322595,2	MCF-7	breast:
13	chr11:62190741..62193393-chr11:62320271..62322746,2	MCF-7	breast:
14	chr11:62321749..62323257-chr11:62339684..62342047,2	K562	blood:
15	chr11:62319433..62322104-chr11:62322263..62325213,4	K562	blood:
16	chr11:62319139..62322243-chr11:62431290..62434171,3	K562	blood:
17	chr11:62319868..62323918-chr11:62358207..62361173,3	K562	blood:
18	chr11:62319259..62322012-chr11:62607721..62611941,5	MCF-7	breast:
19	chr11:62321383..62322896-chr11:62473271..62475688,2	K562	blood:
20	chr11:62317359..62322036-chr11:62339489..62342782,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255432	Chromatin interaction
ENSG00000254772	Chromatin interaction
ENSG00000206597	Chromatin interaction
ENSG00000149021	Chromatin interaction
ENSG00000124942	Chromatin interaction
ENSG00000168000	Chromatin interaction
ENSG00000162194	Chromatin interaction
ENSG00000167978	Chromatin interaction
ENSG00000255446	Chromatin interaction
ENSG00000269176	Chromatin interaction
ENSG00000162188	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000255126	Chromatin interaction
ENSG00000214756	Chromatin interaction
ENSG00000149016	Chromatin interaction
ENSG00000255508	Chromatin interaction
ENSG00000162174	Chromatin interaction
ENSG00000185475	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11231129	1.00[AFR][1000 genomes]
rs11231158	1.00[MKK][hapmap]
rs12277961	1.00[MKK][hapmap]
rs12281309	1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs12287162	1.00[MKK][hapmap]
rs12287847	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915636	chr11:62016992-62713565	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1441 gene(s)	inside rSNPs	diseases
2	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
3	nsv832180	chr11:62201605-62364828	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv532284	chr11:62220043-62630253	Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1401 gene(s)	inside rSNPs	diseases
5	esv3584599	chr11:62262742-62398050	Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
6	esv1801128	chr11:62276347-62329897	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
7	esv1831183	chr11:62276347-62329897	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
8	nsv832182	chr11:62295575-62462848	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
9	nsv347	chr11:62297068-62338927	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62315400-62323600	Enhancers	Left Ventricle	heart
2	chr11:62316400-62325000	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr11:62317200-62322400	Enhancers	GM12878-XiMat	blood
4	chr11:62317600-62322800	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:62317800-62322800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:62318200-62323000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:62318200-62323400	Enhancers	Fetal Muscle Trunk	muscle
8	chr11:62318200-62324400	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:62318400-62322400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:62318400-62324400	Enhancers	Spleen	Spleen
11	chr11:62318400-62324600	Enhancers	Placenta	Placenta
12	chr11:62318400-62324800	Enhancers	Fetal Thymus	thymus
13	chr11:62318600-62324800	Enhancers	Pancreas	Pancrea
14	chr11:62318600-62325000	Enhancers	Fetal Heart	heart
15	chr11:62319000-62322000	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:62319000-62322000	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr11:62319000-62322400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:62319000-62322400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:62319000-62323600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:62319000-62323600	Enhancers	Brain Hippocampus Middle	brain
21	chr11:62319000-62323600	Enhancers	Brain Substantia Nigra	brain
22	chr11:62319000-62324400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:62319000-62324400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:62319000-62325000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:62319000-62326600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr11:62319200-62322400	Enhancers	Small Intestine	intestine
27	chr11:62319200-62322600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:62319200-62324600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:62319200-62324600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr11:62319200-62324600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr11:62319200-62326000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:62319600-62322200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr11:62319600-62322200	Enhancers	Dnd41	blood
34	chr11:62319600-62322600	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr11:62319800-62322000	Enhancers	Fetal Brain Female	brain
36	chr11:62319800-62323400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr11:62320000-62322000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:62320000-62322200	Flanking Active TSS	Rectal Smooth Muscle	rectum
39	chr11:62320000-62322200	Flanking Active TSS	NHEK	skin
40	chr11:62320000-62322400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:62320000-62322400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:62320000-62322400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr11:62320000-62322400	Flanking Active TSS	NHLF	lung
44	chr11:62320000-62324200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:62320000-62324600	Flanking Active TSS	Hela-S3	cervix
46	chr11:62320000-62324800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:62320000-62325200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr11:62320200-62322000	Flanking Active TSS	Osteobl	bone
49	chr11:62320200-62322200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:62320200-62322200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links